Strain Fitness in Dechlorosoma suillum PS around Dsui_1829

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1827 and Dsui_1828 are separated by 24 nucleotidesDsui_1828 and Dsui_1829 are separated by 122 nucleotidesDsui_1829 and Dsui_1830 are separated by 45 nucleotides Dsui_1827: Dsui_1827 - hypothetical protein, at 1,927,173 to 1,927,541 _1827 Dsui_1828: Dsui_1828 - response regulator with putative antiterminator output domain, at 1,927,566 to 1,928,141 _1828 Dsui_1829: Dsui_1829 - hemerythrin HHE cation binding domain-containing protein, at 1,928,264 to 1,928,659 _1829 Dsui_1830: Dsui_1830 - Yip1 domain protein, at 1,928,705 to 1,929,304 _1830 Position (kb) 1928 1929Strain fitness (log2 ratio) -1 0 1 2at 1927.382 kb on + strand, within Dsui_1827at 1927.427 kb on + strand, within Dsui_1827at 1927.556 kb on + strandat 1927.564 kb on - strandat 1927.616 kb on - strandat 1927.628 kb on + strand, within Dsui_1828at 1927.628 kb on + strand, within Dsui_1828at 1927.669 kb on - strandat 1927.687 kb on + strand, within Dsui_1828at 1927.732 kb on + strand, within Dsui_1828at 1927.873 kb on + strand, within Dsui_1828at 1927.881 kb on - strand, within Dsui_1828at 1927.941 kb on - strand, within Dsui_1828at 1927.941 kb on - strand, within Dsui_1828at 1928.008 kb on - strand, within Dsui_1828at 1928.008 kb on - strandat 1928.008 kb on - strand, within Dsui_1828at 1928.047 kb on - strandat 1928.055 kb on + strand, within Dsui_1828at 1928.167 kb on + strandat 1928.238 kb on + strandat 1928.247 kb on - strandat 1928.313 kb on + strand, within Dsui_1829at 1928.502 kb on - strand, within Dsui_1829at 1928.574 kb on + strand, within Dsui_1829at 1928.579 kb on + strand, within Dsui_1829at 1928.579 kb on + strand, within Dsui_1829at 1928.710 kb on - strandat 1928.758 kb on + strandat 1928.843 kb on + strand, within Dsui_1830at 1928.929 kb on + strand, within Dsui_1830at 1928.931 kb on - strand, within Dsui_1830at 1929.010 kb on - strandat 1929.232 kb on - strand, within Dsui_1830at 1929.274 kb on + strandat 1929.292 kb on + strandat 1929.347 kb on + strandat 1929.501 kb on + strandat 1929.516 kb on + strandat 1929.550 kb on + strandat 1929.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,927,382 + Dsui_1827 0.57 +0.1
1,927,427 + Dsui_1827 0.69 -1.0
1,927,556 + -0.0
1,927,564 - +0.2
1,927,616 - +0.6
1,927,628 + Dsui_1828 0.11 -0.6
1,927,628 + Dsui_1828 0.11 -1.5
1,927,669 - -0.6
1,927,687 + Dsui_1828 0.21 +0.2
1,927,732 + Dsui_1828 0.29 -0.9
1,927,873 + Dsui_1828 0.53 -0.4
1,927,881 - Dsui_1828 0.55 -0.3
1,927,941 - Dsui_1828 0.65 +0.2
1,927,941 - Dsui_1828 0.65 -0.8
1,928,008 - Dsui_1828 0.77 -0.7
1,928,008 - -0.3
1,928,008 - Dsui_1828 0.77 -1.6
1,928,047 - +1.0
1,928,055 + Dsui_1828 0.85 +0.3
1,928,167 + -0.5
1,928,238 + -0.5
1,928,247 - +0.6
1,928,313 + Dsui_1829 0.12 +0.1
1,928,502 - Dsui_1829 0.60 -0.9
1,928,574 + Dsui_1829 0.78 +0.1
1,928,579 + Dsui_1829 0.80 +0.3
1,928,579 + Dsui_1829 0.80 +1.2
1,928,710 - -0.8
1,928,758 + -0.2
1,928,843 + Dsui_1830 0.23 +0.7
1,928,929 + Dsui_1830 0.37 -0.6
1,928,931 - Dsui_1830 0.38 +0.4
1,929,010 - +0.4
1,929,232 - Dsui_1830 0.88 -0.3
1,929,274 + -0.8
1,929,292 + +0.1
1,929,347 + +0.1
1,929,501 + +2.0
1,929,516 + -1.2
1,929,550 + +0.4
1,929,648 + -0.6

Or see this region's nucleotide sequence