Strain Fitness in Dechlorosoma suillum PS around Dsui_1682

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1680 and Dsui_1681 are separated by 250 nucleotidesDsui_1681 and Dsui_1682 overlap by 17 nucleotidesDsui_1682 and Dsui_1683 are separated by 0 nucleotidesDsui_1683 and Dsui_1684 are separated by 6 nucleotides Dsui_1680: Dsui_1680 - TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein, at 1,767,695 to 1,770,007 _1680 Dsui_1681: Dsui_1681 - hemin uptake protein, at 1,770,258 to 1,770,446 _1681 Dsui_1682: Dsui_1682 - biopolymer transport protein, at 1,770,430 to 1,770,861 _1682 Dsui_1683: Dsui_1683 - biopolymer transport protein, at 1,770,862 to 1,771,605 _1683 Dsui_1684: Dsui_1684 - TonB family protein, at 1,771,612 to 1,772,271 _1684 Position (kb) 1770 1771Strain fitness (log2 ratio) -2 -1 0 1at 1769.443 kb on + strand, within Dsui_1680at 1769.488 kb on + strand, within Dsui_1680at 1769.488 kb on + strand, within Dsui_1680at 1769.641 kb on + strand, within Dsui_1680at 1769.674 kb on - strand, within Dsui_1680at 1769.698 kb on + strand, within Dsui_1680at 1769.698 kb on + strand, within Dsui_1680at 1769.780 kb on - strandat 1769.908 kb on - strandat 1770.167 kb on - strandat 1770.211 kb on - strandat 1770.217 kb on + strandat 1770.248 kb on + strandat 1770.249 kb on - strandat 1770.449 kb on - strandat 1770.449 kb on - strandat 1770.484 kb on - strand, within Dsui_1682at 1771.605 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
1,769,443 + Dsui_1680 0.76 +0.1
1,769,488 + Dsui_1680 0.78 -0.3
1,769,488 + Dsui_1680 0.78 +0.5
1,769,641 + Dsui_1680 0.84 -0.3
1,769,674 - Dsui_1680 0.86 -0.6
1,769,698 + Dsui_1680 0.87 +0.7
1,769,698 + Dsui_1680 0.87 -1.5
1,769,780 - -0.2
1,769,908 - +0.2
1,770,167 - -0.6
1,770,211 - -0.6
1,770,217 + -0.3
1,770,248 + +0.6
1,770,249 - -0.5
1,770,449 - -1.2
1,770,449 - +0.2
1,770,484 - Dsui_1682 0.12 -2.4
1,771,605 - -0.5

Or see this region's nucleotide sequence