Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1680 and Dsui_1681 are separated by 250 nucleotides Dsui_1681 and Dsui_1682 overlap by 17 nucleotides Dsui_1682 and Dsui_1683 are separated by 0 nucleotides Dsui_1683 and Dsui_1684 are separated by 6 nucleotides
Dsui_1680: Dsui_1680 - TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein, at 1,767,695 to 1,770,007
_1680
Dsui_1681: Dsui_1681 - hemin uptake protein, at 1,770,258 to 1,770,446
_1681
Dsui_1682: Dsui_1682 - biopolymer transport protein, at 1,770,430 to 1,770,861
_1682
Dsui_1683: Dsui_1683 - biopolymer transport protein, at 1,770,862 to 1,771,605
_1683
Dsui_1684: Dsui_1684 - TonB family protein, at 1,771,612 to 1,772,271
_1684
Position (kb)
1770
1771 Strain fitness (log2 ratio)
-2
-1
0
1 at 1769.443 kb on + strand, within Dsui_1680 at 1769.488 kb on + strand, within Dsui_1680 at 1769.488 kb on + strand, within Dsui_1680 at 1769.641 kb on + strand, within Dsui_1680 at 1769.674 kb on - strand, within Dsui_1680 at 1769.698 kb on + strand, within Dsui_1680 at 1769.698 kb on + strand, within Dsui_1680 at 1769.780 kb on - strand at 1769.908 kb on - strand at 1770.167 kb on - strand at 1770.211 kb on - strand at 1770.217 kb on + strand at 1770.248 kb on + strand at 1770.249 kb on - strand at 1770.449 kb on - strand at 1770.449 kb on - strand at 1770.484 kb on - strand, within Dsui_1682 at 1771.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,769,443 + Dsui_1680 0.76 +0.1 1,769,488 + Dsui_1680 0.78 -0.3 1,769,488 + Dsui_1680 0.78 +0.5 1,769,641 + Dsui_1680 0.84 -0.3 1,769,674 - Dsui_1680 0.86 -0.6 1,769,698 + Dsui_1680 0.87 +0.7 1,769,698 + Dsui_1680 0.87 -1.5 1,769,780 - -0.2 1,769,908 - +0.2 1,770,167 - -0.6 1,770,211 - -0.6 1,770,217 + -0.3 1,770,248 + +0.6 1,770,249 - -0.5 1,770,449 - -1.2 1,770,449 - +0.2 1,770,484 - Dsui_1682 0.12 -2.4 1,771,605 - -0.5
Or see this region's nucleotide sequence