Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1643 and Dsui_1644 are separated by 19 nucleotides Dsui_1644 and Dsui_1645 are separated by 10 nucleotides Dsui_1645 and Dsui_1646 are separated by 96 nucleotides Dsui_1646 and Dsui_1647 are separated by 151 nucleotides
Dsui_1643: Dsui_1643 - uncharacterized protein involved in response to NO, at 1,725,150 to 1,726,367
_1643
Dsui_1644: Dsui_1644 - hypothetical protein, at 1,726,387 to 1,726,773
_1644
Dsui_1645: Dsui_1645 - hemerythrin HHE cation binding domain-containing protein, at 1,726,784 to 1,727,362
_1645
Dsui_1646: Dsui_1646 - cAMP-binding protein, at 1,727,459 to 1,728,205
_1646
Dsui_1647: Dsui_1647 - oxygen-independent coproporphyrinogen III oxidase, at 1,728,357 to 1,729,754
_1647
Position (kb)
1726
1727
1728 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1725.849 kb on - strand at 1725.949 kb on + strand, within Dsui_1643 at 1725.957 kb on - strand, within Dsui_1643 at 1726.000 kb on + strand, within Dsui_1643 at 1726.021 kb on - strand at 1726.115 kb on + strand, within Dsui_1643 at 1726.188 kb on - strand, within Dsui_1643 at 1726.279 kb on + strand at 1726.372 kb on + strand at 1726.446 kb on + strand, within Dsui_1644 at 1726.547 kb on - strand, within Dsui_1644 at 1726.598 kb on - strand, within Dsui_1644 at 1726.609 kb on + strand, within Dsui_1644 at 1726.665 kb on + strand, within Dsui_1644 at 1726.699 kb on + strand, within Dsui_1644 at 1726.740 kb on - strand at 1726.796 kb on - strand at 1726.898 kb on - strand, within Dsui_1645 at 1726.946 kb on - strand, within Dsui_1645 at 1727.089 kb on + strand, within Dsui_1645 at 1727.114 kb on + strand, within Dsui_1645 at 1727.151 kb on - strand, within Dsui_1645 at 1727.186 kb on + strand, within Dsui_1645 at 1727.357 kb on + strand at 1727.357 kb on + strand at 1727.357 kb on + strand at 1727.374 kb on + strand at 1727.374 kb on + strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.382 kb on - strand at 1727.387 kb on - strand at 1727.419 kb on + strand at 1727.422 kb on + strand at 1727.467 kb on + strand at 1727.467 kb on + strand at 1727.471 kb on - strand at 1727.475 kb on + strand at 1727.619 kb on + strand at 1727.629 kb on + strand, within Dsui_1646 at 1727.726 kb on - strand, within Dsui_1646 at 1727.737 kb on - strand, within Dsui_1646 at 1727.924 kb on - strand, within Dsui_1646 at 1727.981 kb on - strand, within Dsui_1646 at 1728.005 kb on - strand, within Dsui_1646 at 1728.027 kb on + strand, within Dsui_1646 at 1728.096 kb on + strand, within Dsui_1646 at 1728.228 kb on - strand at 1728.235 kb on + strand at 1728.239 kb on + strand at 1728.271 kb on + strand at 1728.322 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,725,849 - +1.6 1,725,949 + Dsui_1643 0.66 -0.4 1,725,957 - Dsui_1643 0.66 +0.2 1,726,000 + Dsui_1643 0.70 -1.0 1,726,021 - +0.4 1,726,115 + Dsui_1643 0.79 -1.0 1,726,188 - Dsui_1643 0.85 +0.0 1,726,279 + +0.6 1,726,372 + -0.4 1,726,446 + Dsui_1644 0.15 -0.3 1,726,547 - Dsui_1644 0.41 -0.3 1,726,598 - Dsui_1644 0.55 +1.2 1,726,609 + Dsui_1644 0.57 -0.1 1,726,665 + Dsui_1644 0.72 -1.1 1,726,699 + Dsui_1644 0.81 -0.6 1,726,740 - -1.1 1,726,796 - +2.0 1,726,898 - Dsui_1645 0.20 +1.1 1,726,946 - Dsui_1645 0.28 +1.3 1,727,089 + Dsui_1645 0.53 -1.7 1,727,114 + Dsui_1645 0.57 -2.0 1,727,151 - Dsui_1645 0.63 -0.4 1,727,186 + Dsui_1645 0.69 -0.8 1,727,357 + +0.1 1,727,357 + -1.5 1,727,357 + -0.6 1,727,374 + -0.2 1,727,374 + -0.8 1,727,382 - +0.4 1,727,382 - +0.2 1,727,382 - -2.0 1,727,382 - -0.6 1,727,382 - -2.5 1,727,382 - +2.0 1,727,387 - -0.0 1,727,419 + -0.0 1,727,422 + +0.5 1,727,467 + -0.3 1,727,467 + -0.1 1,727,471 - +0.2 1,727,475 + +0.5 1,727,619 + +0.7 1,727,629 + Dsui_1646 0.23 -0.6 1,727,726 - Dsui_1646 0.36 +0.6 1,727,737 - Dsui_1646 0.37 +0.0 1,727,924 - Dsui_1646 0.62 +0.7 1,727,981 - Dsui_1646 0.70 +1.0 1,728,005 - Dsui_1646 0.73 +0.5 1,728,027 + Dsui_1646 0.76 -0.5 1,728,096 + Dsui_1646 0.85 +1.0 1,728,228 - -0.7 1,728,235 + +1.5 1,728,239 + -0.3 1,728,271 + +0.7 1,728,322 + +0.6
Or see this region's nucleotide sequence