Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1492 and Dsui_1493 are separated by 16 nucleotides Dsui_1493 and Dsui_1494 are separated by 27 nucleotides
Dsui_1492: Dsui_1492 - ATPase with chaperone activity, ATP-binding subunit, at 1,553,581 to 1,556,430
_1492
Dsui_1493: Dsui_1493 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase, at 1,556,447 to 1,557,877
_1493
Dsui_1494: Dsui_1494 - ATP-dependent metalloprotease FtsH, at 1,557,905 to 1,559,734
_1494
Position (kb)
1556
1557
1558 Strain fitness (log2 ratio)
-2
-1
0
1 at 1555.537 kb on + strand, within Dsui_1492 at 1555.572 kb on - strand, within Dsui_1492 at 1555.663 kb on + strand, within Dsui_1492 at 1555.663 kb on + strand, within Dsui_1492 at 1555.663 kb on + strand, within Dsui_1492 at 1555.766 kb on - strand, within Dsui_1492 at 1555.779 kb on - strand, within Dsui_1492 at 1555.943 kb on + strand, within Dsui_1492 at 1555.951 kb on - strand, within Dsui_1492 at 1556.112 kb on - strand, within Dsui_1492 at 1556.210 kb on - strand at 1556.259 kb on + strand at 1556.379 kb on - strand at 1556.448 kb on + strand at 1556.514 kb on - strand at 1556.558 kb on - strand at 1556.820 kb on - strand, within Dsui_1493 at 1556.825 kb on - strand, within Dsui_1493 at 1556.878 kb on + strand, within Dsui_1493 at 1556.977 kb on - strand, within Dsui_1493 at 1557.229 kb on + strand, within Dsui_1493 at 1557.233 kb on + strand, within Dsui_1493 at 1557.438 kb on - strand, within Dsui_1493 at 1557.553 kb on - strand, within Dsui_1493 at 1557.591 kb on + strand, within Dsui_1493 at 1557.617 kb on - strand, within Dsui_1493 at 1557.678 kb on + strand, within Dsui_1493 at 1557.678 kb on + strand, within Dsui_1493 at 1557.717 kb on + strand, within Dsui_1493 at 1557.717 kb on + strand, within Dsui_1493 at 1557.725 kb on + strand at 1557.727 kb on + strand, within Dsui_1493 at 1557.733 kb on - strand, within Dsui_1493 at 1557.733 kb on - strand, within Dsui_1493 at 1557.733 kb on - strand, within Dsui_1493 at 1557.735 kb on - strand at 1558.223 kb on - strand, within Dsui_1494 at 1558.225 kb on + strand, within Dsui_1494 at 1558.227 kb on + strand, within Dsui_1494 at 1558.340 kb on - strand, within Dsui_1494 at 1558.361 kb on + strand, within Dsui_1494 at 1558.404 kb on - strand, within Dsui_1494 at 1558.571 kb on + strand, within Dsui_1494
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,555,537 + Dsui_1492 0.69 -1.3 1,555,572 - Dsui_1492 0.70 -1.2 1,555,663 + Dsui_1492 0.73 -0.8 1,555,663 + Dsui_1492 0.73 -1.3 1,555,663 + Dsui_1492 0.73 -1.1 1,555,766 - Dsui_1492 0.77 -0.9 1,555,779 - Dsui_1492 0.77 -1.9 1,555,943 + Dsui_1492 0.83 -0.6 1,555,951 - Dsui_1492 0.83 -0.1 1,556,112 - Dsui_1492 0.89 -0.5 1,556,210 - -0.6 1,556,259 + -1.8 1,556,379 - -0.9 1,556,448 + -2.3 1,556,514 - +0.0 1,556,558 - -1.4 1,556,820 - Dsui_1493 0.26 -1.1 1,556,825 - Dsui_1493 0.26 -0.3 1,556,878 + Dsui_1493 0.30 -1.8 1,556,977 - Dsui_1493 0.37 -1.3 1,557,229 + Dsui_1493 0.55 -1.7 1,557,233 + Dsui_1493 0.55 -1.3 1,557,438 - Dsui_1493 0.69 -1.8 1,557,553 - Dsui_1493 0.77 -2.3 1,557,591 + Dsui_1493 0.80 -1.4 1,557,617 - Dsui_1493 0.82 -2.0 1,557,678 + Dsui_1493 0.86 -1.0 1,557,678 + Dsui_1493 0.86 -1.1 1,557,717 + Dsui_1493 0.89 +0.2 1,557,717 + Dsui_1493 0.89 +0.0 1,557,725 + +1.0 1,557,727 + Dsui_1493 0.89 -0.8 1,557,733 - Dsui_1493 0.90 -2.2 1,557,733 - Dsui_1493 0.90 -2.3 1,557,733 - Dsui_1493 0.90 -1.6 1,557,735 - -2.0 1,558,223 - Dsui_1494 0.17 -1.3 1,558,225 + Dsui_1494 0.17 -2.2 1,558,227 + Dsui_1494 0.18 -0.9 1,558,340 - Dsui_1494 0.24 +0.7 1,558,361 + Dsui_1494 0.25 -2.3 1,558,404 - Dsui_1494 0.27 -1.2 1,558,571 + Dsui_1494 0.36 +0.3
Or see this region's nucleotide sequence