Strain Fitness in Dechlorosoma suillum PS around Dsui_1386

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1385 and Dsui_1386 overlap by 11 nucleotidesDsui_1386 and Dsui_1387 are separated by 88 nucleotidesDsui_1387 and Dsui_1388 overlap by 4 nucleotides Dsui_1385: Dsui_1385 - hypothetical protein, at 1,441,008 to 1,442,711 _1385 Dsui_1386: Dsui_1386 - family 3 adenylate cyclase, at 1,442,701 to 1,444,017 _1386 Dsui_1387: Dsui_1387 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,444,106 to 1,444,822 _1387 Dsui_1388: Dsui_1388 - hypothetical protein, at 1,444,819 to 1,446,975 _1388 Position (kb) 1442 1443 1444 1445Strain fitness (log2 ratio) -1 0 1 2at 1441.704 kb on - strandat 1441.842 kb on + strand, within Dsui_1385at 1441.923 kb on - strand, within Dsui_1385at 1441.948 kb on + strand, within Dsui_1385at 1441.975 kb on - strand, within Dsui_1385at 1442.034 kb on - strand, within Dsui_1385at 1442.050 kb on - strand, within Dsui_1385at 1442.083 kb on - strand, within Dsui_1385at 1442.083 kb on - strand, within Dsui_1385at 1442.144 kb on - strand, within Dsui_1385at 1442.247 kb on + strand, within Dsui_1385at 1442.358 kb on - strand, within Dsui_1385at 1442.541 kb on - strandat 1442.569 kb on - strandat 1442.990 kb on - strand, within Dsui_1386at 1443.171 kb on + strand, within Dsui_1386at 1443.207 kb on + strand, within Dsui_1386at 1443.247 kb on - strand, within Dsui_1386at 1443.379 kb on + strand, within Dsui_1386at 1443.420 kb on - strand, within Dsui_1386at 1443.601 kb on - strand, within Dsui_1386at 1443.603 kb on - strandat 1443.706 kb on - strand, within Dsui_1386at 1443.718 kb on + strandat 1443.726 kb on - strand, within Dsui_1386at 1443.748 kb on - strand, within Dsui_1386at 1443.748 kb on - strand, within Dsui_1386at 1443.764 kb on + strand, within Dsui_1386at 1443.764 kb on - strand, within Dsui_1386at 1443.772 kb on - strand, within Dsui_1386at 1443.772 kb on - strand, within Dsui_1386at 1443.889 kb on + strandat 1443.891 kb on + strandat 1443.902 kb on + strandat 1443.915 kb on - strandat 1444.050 kb on + strandat 1444.338 kb on - strand, within Dsui_1387at 1444.350 kb on - strand, within Dsui_1387at 1444.378 kb on + strandat 1444.428 kb on - strand, within Dsui_1387at 1444.501 kb on + strand, within Dsui_1387at 1444.501 kb on + strandat 1444.509 kb on - strand, within Dsui_1387at 1444.509 kb on - strand, within Dsui_1387at 1444.585 kb on - strand, within Dsui_1387at 1444.646 kb on + strand, within Dsui_1387at 1444.794 kb on - strandat 1444.818 kb on - strandat 1444.862 kb on - strandat 1444.950 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,441,704 - +1.4
1,441,842 + Dsui_1385 0.49 +0.7
1,441,923 - Dsui_1385 0.54 -0.0
1,441,948 + Dsui_1385 0.55 +0.6
1,441,975 - Dsui_1385 0.57 -1.6
1,442,034 - Dsui_1385 0.60 -0.8
1,442,050 - Dsui_1385 0.61 -1.3
1,442,083 - Dsui_1385 0.63 +0.7
1,442,083 - Dsui_1385 0.63 +0.6
1,442,144 - Dsui_1385 0.67 -1.5
1,442,247 + Dsui_1385 0.73 +0.4
1,442,358 - Dsui_1385 0.79 -0.3
1,442,541 - -0.4
1,442,569 - -0.3
1,442,990 - Dsui_1386 0.22 +0.9
1,443,171 + Dsui_1386 0.36 -0.1
1,443,207 + Dsui_1386 0.38 +0.5
1,443,247 - Dsui_1386 0.41 +0.5
1,443,379 + Dsui_1386 0.51 +0.1
1,443,420 - Dsui_1386 0.55 -0.4
1,443,601 - Dsui_1386 0.68 -0.4
1,443,603 - +0.7
1,443,706 - Dsui_1386 0.76 +0.7
1,443,718 + +0.4
1,443,726 - Dsui_1386 0.78 +0.5
1,443,748 - Dsui_1386 0.79 +0.5
1,443,748 - Dsui_1386 0.79 +0.4
1,443,764 + Dsui_1386 0.81 -1.6
1,443,764 - Dsui_1386 0.81 +0.2
1,443,772 - Dsui_1386 0.81 +0.7
1,443,772 - Dsui_1386 0.81 -0.2
1,443,889 + -0.0
1,443,891 + +0.1
1,443,902 + +0.2
1,443,915 - -0.7
1,444,050 + -1.7
1,444,338 - Dsui_1387 0.32 -0.9
1,444,350 - Dsui_1387 0.34 +0.5
1,444,378 + -1.0
1,444,428 - Dsui_1387 0.45 +0.2
1,444,501 + Dsui_1387 0.55 -0.3
1,444,501 + +2.0
1,444,509 - Dsui_1387 0.56 -0.5
1,444,509 - Dsui_1387 0.56 -0.6
1,444,585 - Dsui_1387 0.67 -0.6
1,444,646 + Dsui_1387 0.75 -0.8
1,444,794 - +0.7
1,444,818 - -0.6
1,444,862 - -0.6
1,444,950 + +1.0

Or see this region's nucleotide sequence