Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1385 and Dsui_1386 overlap by 11 nucleotides Dsui_1386 and Dsui_1387 are separated by 88 nucleotides Dsui_1387 and Dsui_1388 overlap by 4 nucleotides
Dsui_1385: Dsui_1385 - hypothetical protein, at 1,441,008 to 1,442,711
_1385
Dsui_1386: Dsui_1386 - family 3 adenylate cyclase, at 1,442,701 to 1,444,017
_1386
Dsui_1387: Dsui_1387 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,444,106 to 1,444,822
_1387
Dsui_1388: Dsui_1388 - hypothetical protein, at 1,444,819 to 1,446,975
_1388
Position (kb)
1442
1443
1444
1445 Strain fitness (log2 ratio)
-1
0
1
2 at 1441.704 kb on - strand at 1441.842 kb on + strand, within Dsui_1385 at 1441.923 kb on - strand, within Dsui_1385 at 1441.948 kb on + strand, within Dsui_1385 at 1441.975 kb on - strand, within Dsui_1385 at 1442.034 kb on - strand, within Dsui_1385 at 1442.050 kb on - strand, within Dsui_1385 at 1442.083 kb on - strand, within Dsui_1385 at 1442.083 kb on - strand, within Dsui_1385 at 1442.144 kb on - strand, within Dsui_1385 at 1442.247 kb on + strand, within Dsui_1385 at 1442.358 kb on - strand, within Dsui_1385 at 1442.541 kb on - strand at 1442.569 kb on - strand at 1442.990 kb on - strand, within Dsui_1386 at 1443.171 kb on + strand, within Dsui_1386 at 1443.207 kb on + strand, within Dsui_1386 at 1443.247 kb on - strand, within Dsui_1386 at 1443.379 kb on + strand, within Dsui_1386 at 1443.420 kb on - strand, within Dsui_1386 at 1443.601 kb on - strand, within Dsui_1386 at 1443.603 kb on - strand at 1443.706 kb on - strand, within Dsui_1386 at 1443.718 kb on + strand at 1443.726 kb on - strand, within Dsui_1386 at 1443.748 kb on - strand, within Dsui_1386 at 1443.748 kb on - strand, within Dsui_1386 at 1443.764 kb on + strand, within Dsui_1386 at 1443.764 kb on - strand, within Dsui_1386 at 1443.772 kb on - strand, within Dsui_1386 at 1443.772 kb on - strand, within Dsui_1386 at 1443.889 kb on + strand at 1443.891 kb on + strand at 1443.902 kb on + strand at 1443.915 kb on - strand at 1444.050 kb on + strand at 1444.338 kb on - strand, within Dsui_1387 at 1444.350 kb on - strand, within Dsui_1387 at 1444.378 kb on + strand at 1444.428 kb on - strand, within Dsui_1387 at 1444.501 kb on + strand, within Dsui_1387 at 1444.501 kb on + strand at 1444.509 kb on - strand, within Dsui_1387 at 1444.509 kb on - strand, within Dsui_1387 at 1444.585 kb on - strand, within Dsui_1387 at 1444.646 kb on + strand, within Dsui_1387 at 1444.794 kb on - strand at 1444.818 kb on - strand at 1444.862 kb on - strand at 1444.950 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,441,704 - +1.4 1,441,842 + Dsui_1385 0.49 +0.7 1,441,923 - Dsui_1385 0.54 -0.0 1,441,948 + Dsui_1385 0.55 +0.6 1,441,975 - Dsui_1385 0.57 -1.6 1,442,034 - Dsui_1385 0.60 -0.8 1,442,050 - Dsui_1385 0.61 -1.3 1,442,083 - Dsui_1385 0.63 +0.7 1,442,083 - Dsui_1385 0.63 +0.6 1,442,144 - Dsui_1385 0.67 -1.5 1,442,247 + Dsui_1385 0.73 +0.4 1,442,358 - Dsui_1385 0.79 -0.3 1,442,541 - -0.4 1,442,569 - -0.3 1,442,990 - Dsui_1386 0.22 +0.9 1,443,171 + Dsui_1386 0.36 -0.1 1,443,207 + Dsui_1386 0.38 +0.5 1,443,247 - Dsui_1386 0.41 +0.5 1,443,379 + Dsui_1386 0.51 +0.1 1,443,420 - Dsui_1386 0.55 -0.4 1,443,601 - Dsui_1386 0.68 -0.4 1,443,603 - +0.7 1,443,706 - Dsui_1386 0.76 +0.7 1,443,718 + +0.4 1,443,726 - Dsui_1386 0.78 +0.5 1,443,748 - Dsui_1386 0.79 +0.5 1,443,748 - Dsui_1386 0.79 +0.4 1,443,764 + Dsui_1386 0.81 -1.6 1,443,764 - Dsui_1386 0.81 +0.2 1,443,772 - Dsui_1386 0.81 +0.7 1,443,772 - Dsui_1386 0.81 -0.2 1,443,889 + -0.0 1,443,891 + +0.1 1,443,902 + +0.2 1,443,915 - -0.7 1,444,050 + -1.7 1,444,338 - Dsui_1387 0.32 -0.9 1,444,350 - Dsui_1387 0.34 +0.5 1,444,378 + -1.0 1,444,428 - Dsui_1387 0.45 +0.2 1,444,501 + Dsui_1387 0.55 -0.3 1,444,501 + +2.0 1,444,509 - Dsui_1387 0.56 -0.5 1,444,509 - Dsui_1387 0.56 -0.6 1,444,585 - Dsui_1387 0.67 -0.6 1,444,646 + Dsui_1387 0.75 -0.8 1,444,794 - +0.7 1,444,818 - -0.6 1,444,862 - -0.6 1,444,950 + +1.0
Or see this region's nucleotide sequence