Strain Fitness in Dechlorosoma suillum PS around Dsui_1270

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1268 and Dsui_1269 are separated by 124 nucleotidesDsui_1269 and Dsui_1270 are separated by 33 nucleotidesDsui_1270 and Dsui_1271 are separated by 10 nucleotides Dsui_1268: Dsui_1268 - dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis, at 1,331,621 to 1,332,370 _1268 Dsui_1269: Dsui_1269 - hypothetical protein, at 1,332,495 to 1,332,917 _1269 Dsui_1270: Dsui_1270 - C-terminal processing peptidase, at 1,332,951 to 1,334,354 _1270 Dsui_1271: Dsui_1271 - membrane-bound metallopeptidase, at 1,334,365 to 1,335,825 _1271 Position (kb) 1332 1333 1334 1335Strain fitness (log2 ratio) -3 -2 -1 0 1at 1332.478 kb on - strandat 1332.573 kb on - strand, within Dsui_1269at 1332.605 kb on + strand, within Dsui_1269at 1332.620 kb on + strand, within Dsui_1269at 1332.629 kb on + strand, within Dsui_1269at 1332.647 kb on - strand, within Dsui_1269at 1332.653 kb on + strandat 1332.716 kb on + strand, within Dsui_1269at 1332.748 kb on - strand, within Dsui_1269at 1332.949 kb on + strandat 1332.987 kb on - strandat 1334.319 kb on - strandat 1334.389 kb on - strandat 1334.450 kb on + strandat 1334.492 kb on - strandat 1334.605 kb on + strand, within Dsui_1271at 1334.612 kb on - strand, within Dsui_1271at 1334.716 kb on + strand, within Dsui_1271at 1334.784 kb on + strand, within Dsui_1271at 1334.909 kb on - strand, within Dsui_1271at 1334.994 kb on - strand, within Dsui_1271at 1335.014 kb on - strand, within Dsui_1271at 1335.126 kb on + strand, within Dsui_1271at 1335.223 kb on - strand, within Dsui_1271at 1335.263 kb on + strand, within Dsui_1271at 1335.322 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,332,478 - -1.4
1,332,573 - Dsui_1269 0.18 -0.0
1,332,605 + Dsui_1269 0.26 -1.8
1,332,620 + Dsui_1269 0.30 -0.6
1,332,629 + Dsui_1269 0.32 -1.4
1,332,647 - Dsui_1269 0.36 +0.1
1,332,653 + -0.0
1,332,716 + Dsui_1269 0.52 -0.4
1,332,748 - Dsui_1269 0.60 -1.5
1,332,949 + -1.1
1,332,987 - -1.1
1,334,319 - -0.1
1,334,389 - -0.2
1,334,450 + -2.9
1,334,492 - +1.0
1,334,605 + Dsui_1271 0.16 -1.5
1,334,612 - Dsui_1271 0.17 -0.7
1,334,716 + Dsui_1271 0.24 -1.6
1,334,784 + Dsui_1271 0.29 -2.1
1,334,909 - Dsui_1271 0.37 -1.8
1,334,994 - Dsui_1271 0.43 -1.6
1,335,014 - Dsui_1271 0.44 -1.7
1,335,126 + Dsui_1271 0.52 -1.2
1,335,223 - Dsui_1271 0.59 -2.0
1,335,263 + Dsui_1271 0.61 -1.1
1,335,322 + +0.4

Or see this region's nucleotide sequence