Strain Fitness in Dechlorosoma suillum PS around Dsui_1238

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1237 and Dsui_1238 are separated by 242 nucleotidesDsui_1238 and Dsui_1239 are separated by 15 nucleotides Dsui_1237: Dsui_1237 - hypothetical protein, at 1,294,889 to 1,296,406 _1237 Dsui_1238: Dsui_1238 - thymidylate synthase, at 1,296,649 to 1,297,443 _1238 Dsui_1239: Dsui_1239 - glucose-6-phosphate isomerase, at 1,297,459 to 1,299,114 _1239 Position (kb) 1296 1297 1298Strain fitness (log2 ratio) -1 0 1 2at 1295.687 kb on + strand, within Dsui_1237at 1295.734 kb on + strand, within Dsui_1237at 1295.734 kb on + strand, within Dsui_1237at 1295.815 kb on + strand, within Dsui_1237at 1295.849 kb on + strand, within Dsui_1237at 1295.852 kb on - strandat 1295.854 kb on + strand, within Dsui_1237at 1295.862 kb on - strand, within Dsui_1237at 1295.862 kb on - strand, within Dsui_1237at 1295.920 kb on - strand, within Dsui_1237at 1295.920 kb on - strand, within Dsui_1237at 1296.131 kb on - strand, within Dsui_1237at 1296.162 kb on + strand, within Dsui_1237at 1296.197 kb on + strand, within Dsui_1237at 1296.201 kb on - strand, within Dsui_1237at 1296.236 kb on - strand, within Dsui_1237at 1296.264 kb on - strandat 1296.317 kb on + strandat 1296.362 kb on + strandat 1296.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,295,687 + Dsui_1237 0.53 -0.1
1,295,734 + Dsui_1237 0.56 +0.6
1,295,734 + Dsui_1237 0.56 -0.4
1,295,815 + Dsui_1237 0.61 -0.8
1,295,849 + Dsui_1237 0.63 +0.1
1,295,852 - +0.6
1,295,854 + Dsui_1237 0.64 -0.6
1,295,862 - Dsui_1237 0.64 -0.4
1,295,862 - Dsui_1237 0.64 +0.4
1,295,920 - Dsui_1237 0.68 -0.1
1,295,920 - Dsui_1237 0.68 +0.4
1,296,131 - Dsui_1237 0.82 +1.5
1,296,162 + Dsui_1237 0.84 -0.7
1,296,197 + Dsui_1237 0.86 -1.0
1,296,201 - Dsui_1237 0.86 +1.9
1,296,236 - Dsui_1237 0.89 +0.6
1,296,264 - +0.1
1,296,317 + -1.0
1,296,362 + -0.2
1,296,527 - -1.4

Or see this region's nucleotide sequence