Strain Fitness in Dechlorosoma suillum PS around Dsui_1235

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1234 and Dsui_1235 are separated by 77 nucleotidesDsui_1235 and Dsui_1236 overlap by 4 nucleotidesDsui_1236 and Dsui_1237 are separated by 8 nucleotides Dsui_1234: Dsui_1234 - putative Zn-dependent protease-like protein, at 1,292,261 to 1,293,655 _1234 Dsui_1235: Dsui_1235 - hypothetical protein, at 1,293,733 to 1,294,290 _1235 Dsui_1236: Dsui_1236 - molybdenum cofactor synthesis domain protein, at 1,294,287 to 1,294,880 _1236 Dsui_1237: Dsui_1237 - hypothetical protein, at 1,294,889 to 1,296,406 _1237 Position (kb) 1293 1294 1295Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1292.959 kb on - strand, within Dsui_1234at 1293.077 kb on - strand, within Dsui_1234at 1293.179 kb on + strand, within Dsui_1234at 1293.187 kb on - strand, within Dsui_1234at 1293.337 kb on - strand, within Dsui_1234at 1293.337 kb on - strand, within Dsui_1234at 1293.356 kb on - strand, within Dsui_1234at 1293.403 kb on + strand, within Dsui_1234at 1293.415 kb on - strand, within Dsui_1234at 1293.415 kb on - strand, within Dsui_1234at 1293.445 kb on + strand, within Dsui_1234at 1293.488 kb on + strandat 1293.666 kb on + strandat 1293.681 kb on - strandat 1293.701 kb on + strandat 1293.703 kb on + strandat 1293.709 kb on - strandat 1293.711 kb on - strandat 1293.711 kb on - strandat 1293.721 kb on - strandat 1293.721 kb on - strandat 1294.011 kb on + strand, within Dsui_1235at 1294.109 kb on + strand, within Dsui_1235at 1294.119 kb on - strand, within Dsui_1235at 1294.166 kb on + strand, within Dsui_1235at 1294.188 kb on - strandat 1294.325 kb on - strandat 1294.393 kb on + strand, within Dsui_1236at 1294.451 kb on + strand, within Dsui_1236at 1294.554 kb on + strand, within Dsui_1236at 1294.567 kb on - strand, within Dsui_1236at 1294.648 kb on + strand, within Dsui_1236at 1294.671 kb on + strand, within Dsui_1236at 1294.705 kb on - strand, within Dsui_1236at 1294.742 kb on + strand, within Dsui_1236at 1294.750 kb on - strand, within Dsui_1236at 1294.757 kb on - strand, within Dsui_1236at 1294.786 kb on + strand, within Dsui_1236at 1294.786 kb on + strand, within Dsui_1236at 1294.786 kb on + strand, within Dsui_1236at 1294.794 kb on - strand, within Dsui_1236at 1294.794 kb on - strand, within Dsui_1236at 1294.794 kb on - strand, within Dsui_1236at 1294.885 kb on + strandat 1294.906 kb on + strandat 1294.906 kb on + strandat 1294.914 kb on - strandat 1295.044 kb on - strand, within Dsui_1237

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,292,959 - Dsui_1234 0.50 -0.5
1,293,077 - Dsui_1234 0.58 -0.9
1,293,179 + Dsui_1234 0.66 -0.4
1,293,187 - Dsui_1234 0.66 +0.1
1,293,337 - Dsui_1234 0.77 -0.6
1,293,337 - Dsui_1234 0.77 -0.0
1,293,356 - Dsui_1234 0.78 +0.1
1,293,403 + Dsui_1234 0.82 -2.5
1,293,415 - Dsui_1234 0.83 -1.5
1,293,415 - Dsui_1234 0.83 -0.2
1,293,445 + Dsui_1234 0.85 -0.7
1,293,488 + +0.3
1,293,666 + +0.3
1,293,681 - -0.3
1,293,701 + +0.2
1,293,703 + -0.7
1,293,709 - -0.4
1,293,711 - -0.1
1,293,711 - +1.1
1,293,721 - -0.5
1,293,721 - +0.9
1,294,011 + Dsui_1235 0.50 +1.3
1,294,109 + Dsui_1235 0.67 -1.0
1,294,119 - Dsui_1235 0.69 -1.4
1,294,166 + Dsui_1235 0.78 -2.2
1,294,188 - -1.1
1,294,325 - -1.9
1,294,393 + Dsui_1236 0.18 -3.2
1,294,451 + Dsui_1236 0.28 -2.6
1,294,554 + Dsui_1236 0.45 -2.1
1,294,567 - Dsui_1236 0.47 -3.7
1,294,648 + Dsui_1236 0.61 -2.7
1,294,671 + Dsui_1236 0.65 -2.8
1,294,705 - Dsui_1236 0.70 -1.1
1,294,742 + Dsui_1236 0.77 -1.7
1,294,750 - Dsui_1236 0.78 -0.2
1,294,757 - Dsui_1236 0.79 -2.9
1,294,786 + Dsui_1236 0.84 -2.3
1,294,786 + Dsui_1236 0.84 -1.4
1,294,786 + Dsui_1236 0.84 -2.9
1,294,794 - Dsui_1236 0.85 -4.1
1,294,794 - Dsui_1236 0.85 -3.2
1,294,794 - Dsui_1236 0.85 -2.0
1,294,885 + -1.0
1,294,906 + -0.6
1,294,906 + +0.8
1,294,914 - -0.5
1,295,044 - Dsui_1237 0.10 -1.0

Or see this region's nucleotide sequence