Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1234 and Dsui_1235 are separated by 77 nucleotides Dsui_1235 and Dsui_1236 overlap by 4 nucleotides Dsui_1236 and Dsui_1237 are separated by 8 nucleotides
Dsui_1234: Dsui_1234 - putative Zn-dependent protease-like protein, at 1,292,261 to 1,293,655
_1234
Dsui_1235: Dsui_1235 - hypothetical protein, at 1,293,733 to 1,294,290
_1235
Dsui_1236: Dsui_1236 - molybdenum cofactor synthesis domain protein, at 1,294,287 to 1,294,880
_1236
Dsui_1237: Dsui_1237 - hypothetical protein, at 1,294,889 to 1,296,406
_1237
Position (kb)
1293
1294
1295 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1292.959 kb on - strand, within Dsui_1234 at 1293.077 kb on - strand, within Dsui_1234 at 1293.179 kb on + strand, within Dsui_1234 at 1293.187 kb on - strand, within Dsui_1234 at 1293.337 kb on - strand, within Dsui_1234 at 1293.337 kb on - strand, within Dsui_1234 at 1293.356 kb on - strand, within Dsui_1234 at 1293.403 kb on + strand, within Dsui_1234 at 1293.415 kb on - strand, within Dsui_1234 at 1293.415 kb on - strand, within Dsui_1234 at 1293.445 kb on + strand, within Dsui_1234 at 1293.488 kb on + strand at 1293.666 kb on + strand at 1293.681 kb on - strand at 1293.701 kb on + strand at 1293.703 kb on + strand at 1293.709 kb on - strand at 1293.711 kb on - strand at 1293.711 kb on - strand at 1293.721 kb on - strand at 1293.721 kb on - strand at 1294.011 kb on + strand, within Dsui_1235 at 1294.109 kb on + strand, within Dsui_1235 at 1294.119 kb on - strand, within Dsui_1235 at 1294.166 kb on + strand, within Dsui_1235 at 1294.188 kb on - strand at 1294.325 kb on - strand at 1294.393 kb on + strand, within Dsui_1236 at 1294.451 kb on + strand, within Dsui_1236 at 1294.554 kb on + strand, within Dsui_1236 at 1294.567 kb on - strand, within Dsui_1236 at 1294.648 kb on + strand, within Dsui_1236 at 1294.671 kb on + strand, within Dsui_1236 at 1294.705 kb on - strand, within Dsui_1236 at 1294.742 kb on + strand, within Dsui_1236 at 1294.750 kb on - strand, within Dsui_1236 at 1294.757 kb on - strand, within Dsui_1236 at 1294.786 kb on + strand, within Dsui_1236 at 1294.786 kb on + strand, within Dsui_1236 at 1294.786 kb on + strand, within Dsui_1236 at 1294.794 kb on - strand, within Dsui_1236 at 1294.794 kb on - strand, within Dsui_1236 at 1294.794 kb on - strand, within Dsui_1236 at 1294.885 kb on + strand at 1294.906 kb on + strand at 1294.906 kb on + strand at 1294.914 kb on - strand at 1295.044 kb on - strand, within Dsui_1237
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,292,959 - Dsui_1234 0.50 -0.5 1,293,077 - Dsui_1234 0.58 -0.9 1,293,179 + Dsui_1234 0.66 -0.4 1,293,187 - Dsui_1234 0.66 +0.1 1,293,337 - Dsui_1234 0.77 -0.6 1,293,337 - Dsui_1234 0.77 -0.0 1,293,356 - Dsui_1234 0.78 +0.1 1,293,403 + Dsui_1234 0.82 -2.5 1,293,415 - Dsui_1234 0.83 -1.5 1,293,415 - Dsui_1234 0.83 -0.2 1,293,445 + Dsui_1234 0.85 -0.7 1,293,488 + +0.3 1,293,666 + +0.3 1,293,681 - -0.3 1,293,701 + +0.2 1,293,703 + -0.7 1,293,709 - -0.4 1,293,711 - -0.1 1,293,711 - +1.1 1,293,721 - -0.5 1,293,721 - +0.9 1,294,011 + Dsui_1235 0.50 +1.3 1,294,109 + Dsui_1235 0.67 -1.0 1,294,119 - Dsui_1235 0.69 -1.4 1,294,166 + Dsui_1235 0.78 -2.2 1,294,188 - -1.1 1,294,325 - -1.9 1,294,393 + Dsui_1236 0.18 -3.2 1,294,451 + Dsui_1236 0.28 -2.6 1,294,554 + Dsui_1236 0.45 -2.1 1,294,567 - Dsui_1236 0.47 -3.7 1,294,648 + Dsui_1236 0.61 -2.7 1,294,671 + Dsui_1236 0.65 -2.8 1,294,705 - Dsui_1236 0.70 -1.1 1,294,742 + Dsui_1236 0.77 -1.7 1,294,750 - Dsui_1236 0.78 -0.2 1,294,757 - Dsui_1236 0.79 -2.9 1,294,786 + Dsui_1236 0.84 -2.3 1,294,786 + Dsui_1236 0.84 -1.4 1,294,786 + Dsui_1236 0.84 -2.9 1,294,794 - Dsui_1236 0.85 -4.1 1,294,794 - Dsui_1236 0.85 -3.2 1,294,794 - Dsui_1236 0.85 -2.0 1,294,885 + -1.0 1,294,906 + -0.6 1,294,906 + +0.8 1,294,914 - -0.5 1,295,044 - Dsui_1237 0.10 -1.0
Or see this region's nucleotide sequence