Strain Fitness in Dechlorosoma suillum PS around Dsui_1224

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1222 and Dsui_1223 are separated by 4 nucleotidesDsui_1223 and Dsui_1224 are separated by 10 nucleotidesDsui_1224 and Dsui_1225 are separated by 83 nucleotides Dsui_1222: Dsui_1222 - DNA polymerase III, delta subunit, at 1,277,136 to 1,278,137 _1222 Dsui_1223: Dsui_1223 - Rare lipoprotein B, at 1,278,142 to 1,278,648 _1223 Dsui_1224: Dsui_1224 - leucyl-tRNA synthetase, at 1,278,659 to 1,281,328 _1224 Dsui_1225: Dsui_1225 - sporulation related protein, at 1,281,412 to 1,282,305 _1225 Position (kb) 1278 1279 1280 1281 1282Strain fitness (log2 ratio) -1 0 1 2at 1281.325 kb on + strandat 1281.386 kb on + strandat 1281.394 kb on - strandat 1281.403 kb on + strandat 1281.435 kb on + strandat 1281.436 kb on - strandat 1281.443 kb on + strandat 1281.501 kb on + strandat 1281.527 kb on + strand, within Dsui_1225at 1281.540 kb on - strand, within Dsui_1225at 1281.657 kb on + strand, within Dsui_1225at 1281.672 kb on - strand, within Dsui_1225at 1281.811 kb on - strandat 1281.843 kb on - strand, within Dsui_1225at 1281.864 kb on - strandat 1281.925 kb on + strand, within Dsui_1225at 1281.990 kb on + strand, within Dsui_1225at 1282.104 kb on + strand, within Dsui_1225

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,281,325 + -0.4
1,281,386 + -0.0
1,281,394 - +0.0
1,281,403 + -1.3
1,281,435 + -0.3
1,281,436 - -0.5
1,281,443 + -0.1
1,281,501 + -0.1
1,281,527 + Dsui_1225 0.13 -0.5
1,281,540 - Dsui_1225 0.14 -0.6
1,281,657 + Dsui_1225 0.27 -0.5
1,281,672 - Dsui_1225 0.29 -1.5
1,281,811 - +0.9
1,281,843 - Dsui_1225 0.48 +0.4
1,281,864 - +1.9
1,281,925 + Dsui_1225 0.57 -1.1
1,281,990 + Dsui_1225 0.65 -0.8
1,282,104 + Dsui_1225 0.77 -1.3

Or see this region's nucleotide sequence