Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1118 and Dsui_1119 are separated by 47 nucleotides Dsui_1119 and Dsui_1120 overlap by 4 nucleotides Dsui_1120 and Dsui_1121 are separated by 101 nucleotides
Dsui_1118: Dsui_1118 - putative permease, at 1,166,050 to 1,166,946
_1118
Dsui_1119: Dsui_1119 - glutathione peroxidase, at 1,166,994 to 1,167,482
_1119
Dsui_1120: Dsui_1120 - uncharacterized protein SCO1/SenC/PrrC, at 1,167,479 to 1,168,063
_1120
Dsui_1121: Dsui_1121 - alternative sigma factor RpoH, at 1,168,165 to 1,169,022
_1121
Position (kb)
1166
1167
1168 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1166.010 kb on + strand at 1166.018 kb on - strand at 1166.062 kb on + strand at 1166.183 kb on - strand, within Dsui_1118 at 1166.193 kb on - strand, within Dsui_1118 at 1166.212 kb on + strand, within Dsui_1118 at 1166.261 kb on + strand, within Dsui_1118 at 1166.278 kb on + strand, within Dsui_1118 at 1166.286 kb on - strand, within Dsui_1118 at 1166.345 kb on - strand, within Dsui_1118 at 1166.524 kb on + strand, within Dsui_1118 at 1166.532 kb on - strand, within Dsui_1118 at 1166.532 kb on - strand, within Dsui_1118 at 1166.532 kb on - strand, within Dsui_1118 at 1166.543 kb on + strand, within Dsui_1118 at 1166.832 kb on + strand, within Dsui_1118 at 1166.832 kb on + strand, within Dsui_1118 at 1166.840 kb on - strand, within Dsui_1118 at 1166.977 kb on + strand at 1167.168 kb on + strand, within Dsui_1119 at 1167.325 kb on + strand, within Dsui_1119 at 1167.327 kb on - strand, within Dsui_1119 at 1167.408 kb on - strand, within Dsui_1119 at 1167.493 kb on + strand at 1167.508 kb on + strand at 1167.731 kb on + strand, within Dsui_1120 at 1167.732 kb on + strand, within Dsui_1120 at 1167.795 kb on + strand, within Dsui_1120 at 1167.855 kb on - strand, within Dsui_1120 at 1167.931 kb on + strand, within Dsui_1120 at 1167.939 kb on - strand, within Dsui_1120 at 1168.010 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,166,010 + -0.9 1,166,018 - -1.0 1,166,062 + -1.1 1,166,183 - Dsui_1118 0.15 -0.0 1,166,193 - Dsui_1118 0.16 -2.7 1,166,212 + Dsui_1118 0.18 -1.5 1,166,261 + Dsui_1118 0.24 -0.6 1,166,278 + Dsui_1118 0.25 -0.7 1,166,286 - Dsui_1118 0.26 -0.7 1,166,345 - Dsui_1118 0.33 -0.3 1,166,524 + Dsui_1118 0.53 -1.5 1,166,532 - Dsui_1118 0.54 -1.4 1,166,532 - Dsui_1118 0.54 -1.0 1,166,532 - Dsui_1118 0.54 -1.7 1,166,543 + Dsui_1118 0.55 -2.3 1,166,832 + Dsui_1118 0.87 -1.5 1,166,832 + Dsui_1118 0.87 -1.2 1,166,840 - Dsui_1118 0.88 +0.5 1,166,977 + -2.0 1,167,168 + Dsui_1119 0.36 -1.5 1,167,325 + Dsui_1119 0.68 -1.6 1,167,327 - Dsui_1119 0.68 +0.5 1,167,408 - Dsui_1119 0.85 -1.2 1,167,493 + -1.1 1,167,508 + -3.4 1,167,731 + Dsui_1120 0.43 -0.2 1,167,732 + Dsui_1120 0.43 -0.5 1,167,795 + Dsui_1120 0.54 +0.5 1,167,855 - Dsui_1120 0.64 -1.3 1,167,931 + Dsui_1120 0.77 -0.6 1,167,939 - Dsui_1120 0.79 -0.0 1,168,010 + -0.9
Or see this region's nucleotide sequence