Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1108 and Dsui_1109 are separated by 18 nucleotides Dsui_1109 and Dsui_1110 are separated by 15 nucleotides Dsui_1110 and Dsui_1111 are separated by 15 nucleotides
Dsui_1108: Dsui_1108 - AMP-forming long-chain acyl-CoA synthetase, at 1,153,950 to 1,155,929
_1108
Dsui_1109: Dsui_1109 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,155,948 to 1,156,748
_1109
Dsui_1110: Dsui_1110 - branched-chain amino acid ABC-type transport system, permease component, at 1,156,764 to 1,157,657
_1110
Dsui_1111: Dsui_1111 - ABC-type branched-chain amino acid transport system, permease component, at 1,157,673 to 1,158,740
_1111
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-2
-1
0
1 at 1155.791 kb on - strand at 1155.814 kb on + strand at 1155.904 kb on + strand at 1155.924 kb on + strand at 1155.937 kb on - strand at 1156.224 kb on + strand, within Dsui_1109 at 1156.258 kb on - strand, within Dsui_1109 at 1156.258 kb on - strand, within Dsui_1109 at 1156.277 kb on + strand, within Dsui_1109 at 1156.285 kb on - strand, within Dsui_1109 at 1156.285 kb on - strand, within Dsui_1109 at 1156.394 kb on - strand, within Dsui_1109 at 1156.420 kb on - strand, within Dsui_1109 at 1156.459 kb on + strand, within Dsui_1109 at 1156.502 kb on + strand, within Dsui_1109 at 1156.613 kb on + strand, within Dsui_1109 at 1156.631 kb on + strand at 1156.723 kb on + strand at 1156.730 kb on + strand at 1156.737 kb on - strand at 1156.950 kb on + strand, within Dsui_1110 at 1157.127 kb on - strand, within Dsui_1110 at 1157.127 kb on - strand, within Dsui_1110 at 1157.127 kb on - strand, within Dsui_1110 at 1157.395 kb on - strand, within Dsui_1110 at 1157.395 kb on - strand, within Dsui_1110 at 1157.592 kb on + strand at 1157.651 kb on + strand at 1157.659 kb on - strand at 1157.659 kb on - strand at 1157.696 kb on + strand at 1157.704 kb on - strand at 1157.767 kb on + strand at 1157.794 kb on + strand, within Dsui_1111 at 1157.982 kb on - strand, within Dsui_1111 at 1158.316 kb on - strand, within Dsui_1111 at 1158.353 kb on + strand, within Dsui_1111 at 1158.407 kb on + strand, within Dsui_1111 at 1158.408 kb on + strand, within Dsui_1111 at 1158.454 kb on + strand, within Dsui_1111 at 1158.523 kb on + strand, within Dsui_1111 at 1158.613 kb on + strand, within Dsui_1111
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,155,791 - -0.1 1,155,814 + -0.3 1,155,904 + -0.8 1,155,924 + -0.7 1,155,937 - -0.3 1,156,224 + Dsui_1109 0.34 +0.3 1,156,258 - Dsui_1109 0.39 -1.9 1,156,258 - Dsui_1109 0.39 +1.0 1,156,277 + Dsui_1109 0.41 -0.7 1,156,285 - Dsui_1109 0.42 -0.6 1,156,285 - Dsui_1109 0.42 -0.1 1,156,394 - Dsui_1109 0.56 -0.4 1,156,420 - Dsui_1109 0.59 -1.9 1,156,459 + Dsui_1109 0.64 -0.3 1,156,502 + Dsui_1109 0.69 -0.8 1,156,613 + Dsui_1109 0.83 -2.6 1,156,631 + -0.4 1,156,723 + +0.1 1,156,730 + +0.3 1,156,737 - -0.5 1,156,950 + Dsui_1110 0.21 +0.5 1,157,127 - Dsui_1110 0.41 -0.3 1,157,127 - Dsui_1110 0.41 -1.8 1,157,127 - Dsui_1110 0.41 -0.4 1,157,395 - Dsui_1110 0.71 -0.4 1,157,395 - Dsui_1110 0.71 -0.9 1,157,592 + +0.0 1,157,651 + +0.2 1,157,659 - +0.6 1,157,659 - -1.6 1,157,696 + -0.8 1,157,704 - -1.3 1,157,767 + +0.4 1,157,794 + Dsui_1111 0.11 -1.0 1,157,982 - Dsui_1111 0.29 -1.2 1,158,316 - Dsui_1111 0.60 -0.5 1,158,353 + Dsui_1111 0.64 -0.2 1,158,407 + Dsui_1111 0.69 -0.5 1,158,408 + Dsui_1111 0.69 -1.7 1,158,454 + Dsui_1111 0.73 -0.8 1,158,523 + Dsui_1111 0.80 -0.7 1,158,613 + Dsui_1111 0.88 -0.8
Or see this region's nucleotide sequence