Strain Fitness in Dechlorosoma suillum PS around Dsui_1046

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1044 and Dsui_1045 are separated by 13 nucleotidesDsui_1045 and Dsui_1046 are separated by 4 nucleotidesDsui_1046 and Dsui_1047 are separated by 3 nucleotidesDsui_1047 and Dsui_1048 are separated by 328 nucleotides Dsui_1044: Dsui_1044 - hypothetical protein, at 1,075,712 to 1,078,858 _1044 Dsui_1045: Dsui_1045 - hypothetical protein, at 1,078,872 to 1,079,318 _1045 Dsui_1046: Dsui_1046 - hypothetical protein, at 1,079,323 to 1,080,141 _1046 Dsui_1047: Dsui_1047 - Rhodanese-related sulfurtransferase, at 1,080,145 to 1,080,597 _1047 Dsui_1048: Dsui_1048 - glutamine synthetase, type I, at 1,080,926 to 1,082,338 _1048 Position (kb) 1079 1080 1081Strain fitness (log2 ratio) -2 -1 0 1 2at 1078.415 kb on - strandat 1078.422 kb on + strand, within Dsui_1044at 1078.499 kb on - strandat 1078.567 kb on + strandat 1078.590 kb on - strandat 1078.594 kb on - strandat 1078.622 kb on + strandat 1078.645 kb on - strandat 1078.710 kb on - strandat 1078.718 kb on - strandat 1078.720 kb on + strandat 1078.728 kb on - strandat 1078.733 kb on + strandat 1078.748 kb on + strandat 1078.752 kb on - strandat 1078.762 kb on + strandat 1078.766 kb on + strandat 1078.820 kb on + strandat 1078.833 kb on - strandat 1078.835 kb on + strandat 1078.836 kb on + strandat 1078.909 kb on + strandat 1079.011 kb on + strand, within Dsui_1045at 1079.025 kb on - strand, within Dsui_1045at 1079.046 kb on - strand, within Dsui_1045at 1079.089 kb on + strand, within Dsui_1045at 1079.097 kb on + strand, within Dsui_1045at 1079.185 kb on - strand, within Dsui_1045at 1079.185 kb on - strand, within Dsui_1045at 1079.245 kb on + strand, within Dsui_1045at 1079.264 kb on + strand, within Dsui_1045at 1079.315 kb on - strandat 1079.361 kb on + strandat 1079.362 kb on + strandat 1079.362 kb on + strandat 1079.362 kb on + strandat 1079.362 kb on + strandat 1079.362 kb on + strandat 1079.370 kb on - strandat 1079.370 kb on - strandat 1079.430 kb on + strand, within Dsui_1046at 1079.446 kb on + strandat 1079.591 kb on - strand, within Dsui_1046at 1079.624 kb on + strand, within Dsui_1046at 1079.624 kb on + strandat 1079.654 kb on + strand, within Dsui_1046at 1079.654 kb on + strand, within Dsui_1046at 1079.654 kb on + strand, within Dsui_1046at 1079.664 kb on - strand, within Dsui_1046at 1079.694 kb on - strand, within Dsui_1046at 1079.752 kb on + strand, within Dsui_1046at 1079.754 kb on - strandat 1079.776 kb on - strand, within Dsui_1046at 1079.781 kb on + strand, within Dsui_1046at 1079.837 kb on + strand, within Dsui_1046at 1079.912 kb on - strand, within Dsui_1046at 1080.143 kb on + strandat 1080.241 kb on + strand, within Dsui_1047at 1080.249 kb on + strand, within Dsui_1047at 1080.250 kb on - strand, within Dsui_1047at 1080.386 kb on + strand, within Dsui_1047at 1080.434 kb on + strand, within Dsui_1047at 1080.442 kb on - strand, within Dsui_1047at 1080.442 kb on - strand, within Dsui_1047at 1080.447 kb on - strand, within Dsui_1047at 1080.457 kb on - strand, within Dsui_1047at 1080.464 kb on + strand, within Dsui_1047at 1080.506 kb on - strand, within Dsui_1047at 1080.530 kb on + strand, within Dsui_1047at 1080.538 kb on - strand, within Dsui_1047at 1080.554 kb on + strandat 1080.630 kb on + strandat 1080.681 kb on + strandat 1080.705 kb on + strandat 1080.705 kb on + strandat 1080.713 kb on - strandat 1080.713 kb on - strandat 1080.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,078,415 - +1.4
1,078,422 + Dsui_1044 0.86 -1.0
1,078,499 - +0.4
1,078,567 + +0.2
1,078,590 - -0.0
1,078,594 - -0.0
1,078,622 + -0.3
1,078,645 - -0.0
1,078,710 - +1.2
1,078,718 - +2.0
1,078,720 + +0.4
1,078,728 - -0.2
1,078,733 + -0.5
1,078,748 + +0.3
1,078,752 - +0.4
1,078,762 + +0.2
1,078,766 + -0.4
1,078,820 + -0.4
1,078,833 - -1.7
1,078,835 + -0.4
1,078,836 + +1.0
1,078,909 + +1.4
1,079,011 + Dsui_1045 0.31 -0.3
1,079,025 - Dsui_1045 0.34 -0.0
1,079,046 - Dsui_1045 0.39 -0.4
1,079,089 + Dsui_1045 0.49 +0.5
1,079,097 + Dsui_1045 0.50 -1.6
1,079,185 - Dsui_1045 0.70 +1.0
1,079,185 - Dsui_1045 0.70 -0.8
1,079,245 + Dsui_1045 0.83 +0.4
1,079,264 + Dsui_1045 0.88 -0.6
1,079,315 - +1.0
1,079,361 + +0.4
1,079,362 + -2.2
1,079,362 + -1.1
1,079,362 + -0.4
1,079,362 + +0.2
1,079,362 + -1.2
1,079,370 - -1.0
1,079,370 - +0.2
1,079,430 + Dsui_1046 0.13 +0.2
1,079,446 + +0.2
1,079,591 - Dsui_1046 0.33 -0.6
1,079,624 + Dsui_1046 0.37 -0.4
1,079,624 + +0.4
1,079,654 + Dsui_1046 0.40 +0.4
1,079,654 + Dsui_1046 0.40 -1.4
1,079,654 + Dsui_1046 0.40 -0.5
1,079,664 - Dsui_1046 0.42 -0.9
1,079,694 - Dsui_1046 0.45 -0.6
1,079,752 + Dsui_1046 0.52 -1.6
1,079,754 - -0.4
1,079,776 - Dsui_1046 0.55 -0.8
1,079,781 + Dsui_1046 0.56 -0.6
1,079,837 + Dsui_1046 0.63 -0.7
1,079,912 - Dsui_1046 0.72 -1.1
1,080,143 + +0.4
1,080,241 + Dsui_1047 0.21 -0.8
1,080,249 + Dsui_1047 0.23 +0.5
1,080,250 - Dsui_1047 0.23 -1.8
1,080,386 + Dsui_1047 0.53 -0.1
1,080,434 + Dsui_1047 0.64 +0.1
1,080,442 - Dsui_1047 0.66 +0.2
1,080,442 - Dsui_1047 0.66 -1.3
1,080,447 - Dsui_1047 0.67 -1.1
1,080,457 - Dsui_1047 0.69 +2.0
1,080,464 + Dsui_1047 0.70 +0.3
1,080,506 - Dsui_1047 0.80 +0.2
1,080,530 + Dsui_1047 0.85 -0.3
1,080,538 - Dsui_1047 0.87 -1.3
1,080,554 + +1.0
1,080,630 + -0.3
1,080,681 + -0.1
1,080,705 + -0.3
1,080,705 + -0.1
1,080,713 - +2.0
1,080,713 - +0.4
1,080,852 - -0.2

Or see this region's nucleotide sequence