Strain Fitness in Dechlorosoma suillum PS around Dsui_1005

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1003 and Dsui_1004 are separated by 113 nucleotidesDsui_1004 and Dsui_1005 are separated by 88 nucleotidesDsui_1005 and Dsui_1006 are separated by 40 nucleotides Dsui_1003: Dsui_1003 - phosphoribosylglycinamide formyltransferase 2, at 1,031,262 to 1,032,494 _1003 Dsui_1004: Dsui_1004 - conserved protein of DIM6/NTAB family, at 1,032,608 to 1,033,159 _1004 Dsui_1005: Dsui_1005 - tRNA-Gly, at 1,033,248 to 1,033,321 _1005 Dsui_1006: Dsui_1006 - transcriptional regulator, at 1,033,362 to 1,034,282 _1006 Position (kb) 1033 1034Strain fitness (log2 ratio) -1 0 1 2at 1032.384 kb on + strandat 1032.394 kb on - strandat 1032.630 kb on + strandat 1032.710 kb on + strand, within Dsui_1004at 1032.849 kb on + strand, within Dsui_1004at 1032.884 kb on - strandat 1032.928 kb on - strandat 1033.006 kb on - strandat 1033.174 kb on + strandat 1033.257 kb on + strand, within Dsui_1005at 1033.269 kb on + strand, within Dsui_1005at 1033.277 kb on - strandat 1033.284 kb on + strand, within Dsui_1005at 1033.349 kb on - strandat 1033.403 kb on - strandat 1033.413 kb on - strandat 1033.712 kb on - strand, within Dsui_1006at 1033.737 kb on - strand, within Dsui_1006at 1033.758 kb on - strand, within Dsui_1006at 1033.845 kb on + strand, within Dsui_1006at 1033.884 kb on + strand, within Dsui_1006at 1033.908 kb on - strand, within Dsui_1006at 1033.985 kb on + strand, within Dsui_1006at 1033.990 kb on + strandat 1034.149 kb on - strand, within Dsui_1006at 1034.159 kb on + strand, within Dsui_1006at 1034.166 kb on - strand, within Dsui_1006at 1034.179 kb on + strandat 1034.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,032,384 + -0.6
1,032,394 - +0.2
1,032,630 + +2.0
1,032,710 + Dsui_1004 0.18 -0.3
1,032,849 + Dsui_1004 0.44 +1.0
1,032,884 - -1.0
1,032,928 - +1.0
1,033,006 - +0.7
1,033,174 + -0.2
1,033,257 + Dsui_1005 0.12 -1.3
1,033,269 + Dsui_1005 0.28 -1.3
1,033,277 - -0.0
1,033,284 + Dsui_1005 0.49 +1.0
1,033,349 - +0.2
1,033,403 - -0.8
1,033,413 - -0.6
1,033,712 - Dsui_1006 0.38 +0.1
1,033,737 - Dsui_1006 0.41 -0.4
1,033,758 - Dsui_1006 0.43 -0.9
1,033,845 + Dsui_1006 0.52 -1.0
1,033,884 + Dsui_1006 0.57 -0.6
1,033,908 - Dsui_1006 0.59 -1.0
1,033,985 + Dsui_1006 0.68 -0.7
1,033,990 + -0.0
1,034,149 - Dsui_1006 0.85 -1.3
1,034,159 + Dsui_1006 0.87 -0.5
1,034,166 - Dsui_1006 0.87 -1.3
1,034,179 + +0.4
1,034,253 - -0.8

Or see this region's nucleotide sequence