Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1001 and Dsui_1002 overlap by 4 nucleotides Dsui_1002 and Dsui_1003 are separated by 15 nucleotides Dsui_1003 and Dsui_1004 are separated by 113 nucleotides Dsui_1004 and Dsui_1005 are separated by 88 nucleotides Dsui_1005 and Dsui_1006 are separated by 40 nucleotides
Dsui_1001: Dsui_1001 - hypothetical protein, at 1,028,965 to 1,030,335
_1001
Dsui_1002: Dsui_1002 - prolyl oligopeptidase family protein, at 1,030,332 to 1,031,246
_1002
Dsui_1003: Dsui_1003 - phosphoribosylglycinamide formyltransferase 2, at 1,031,262 to 1,032,494
_1003
Dsui_1004: Dsui_1004 - conserved protein of DIM6/NTAB family, at 1,032,608 to 1,033,159
_1004
Dsui_1005: Dsui_1005 - tRNA-Gly, at 1,033,248 to 1,033,321
_1005
Dsui_1006: Dsui_1006 - transcriptional regulator, at 1,033,362 to 1,034,282
_1006
Position (kb)
1031
1032
1033 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1030.278 kb on + strand at 1030.298 kb on + strand at 1030.358 kb on - strand at 1030.552 kb on + strand, within Dsui_1002 at 1030.631 kb on + strand at 1030.649 kb on - strand, within Dsui_1002 at 1030.958 kb on - strand, within Dsui_1002 at 1031.172 kb on + strand at 1031.175 kb on - strand at 1031.180 kb on - strand at 1031.336 kb on + strand at 1031.360 kb on + strand at 1031.388 kb on + strand at 1031.422 kb on - strand, within Dsui_1003 at 1031.438 kb on - strand, within Dsui_1003 at 1031.438 kb on - strand, within Dsui_1003 at 1031.466 kb on - strand, within Dsui_1003 at 1031.516 kb on + strand, within Dsui_1003 at 1031.543 kb on - strand, within Dsui_1003 at 1031.596 kb on - strand, within Dsui_1003 at 1031.647 kb on + strand at 1031.725 kb on - strand, within Dsui_1003 at 1031.748 kb on + strand, within Dsui_1003 at 1031.783 kb on - strand, within Dsui_1003 at 1031.828 kb on + strand at 1031.828 kb on + strand, within Dsui_1003 at 1031.988 kb on - strand, within Dsui_1003 at 1032.031 kb on + strand, within Dsui_1003 at 1032.049 kb on + strand, within Dsui_1003 at 1032.229 kb on - strand, within Dsui_1003 at 1032.384 kb on + strand at 1032.394 kb on - strand at 1032.630 kb on + strand at 1032.710 kb on + strand, within Dsui_1004 at 1032.849 kb on + strand, within Dsui_1004 at 1032.884 kb on - strand at 1032.928 kb on - strand at 1033.006 kb on - strand at 1033.174 kb on + strand at 1033.257 kb on + strand, within Dsui_1005 at 1033.269 kb on + strand, within Dsui_1005 at 1033.277 kb on - strand at 1033.284 kb on + strand, within Dsui_1005 at 1033.349 kb on - strand at 1033.403 kb on - strand at 1033.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,030,278 + +0.0 1,030,298 + -1.1 1,030,358 - -1.3 1,030,552 + Dsui_1002 0.24 -0.0 1,030,631 + +0.4 1,030,649 - Dsui_1002 0.35 -2.0 1,030,958 - Dsui_1002 0.68 -2.7 1,031,172 + -0.5 1,031,175 - -0.3 1,031,180 - -0.5 1,031,336 + -0.3 1,031,360 + -0.7 1,031,388 + +0.7 1,031,422 - Dsui_1003 0.13 -0.1 1,031,438 - Dsui_1003 0.14 +0.3 1,031,438 - Dsui_1003 0.14 +1.1 1,031,466 - Dsui_1003 0.17 -0.3 1,031,516 + Dsui_1003 0.21 +0.3 1,031,543 - Dsui_1003 0.23 -0.2 1,031,596 - Dsui_1003 0.27 -0.7 1,031,647 + +1.0 1,031,725 - Dsui_1003 0.38 +0.4 1,031,748 + Dsui_1003 0.39 -1.4 1,031,783 - Dsui_1003 0.42 -0.9 1,031,828 + +2.0 1,031,828 + Dsui_1003 0.46 -0.3 1,031,988 - Dsui_1003 0.59 +1.4 1,032,031 + Dsui_1003 0.62 -0.0 1,032,049 + Dsui_1003 0.64 -0.5 1,032,229 - Dsui_1003 0.78 -0.2 1,032,384 + -0.6 1,032,394 - +0.2 1,032,630 + +2.0 1,032,710 + Dsui_1004 0.18 -0.3 1,032,849 + Dsui_1004 0.44 +1.0 1,032,884 - -1.0 1,032,928 - +1.0 1,033,006 - +0.7 1,033,174 + -0.2 1,033,257 + Dsui_1005 0.12 -1.3 1,033,269 + Dsui_1005 0.28 -1.3 1,033,277 - -0.0 1,033,284 + Dsui_1005 0.49 +1.0 1,033,349 - +0.2 1,033,403 - -0.8 1,033,413 - -0.6
Or see this region's nucleotide sequence