Strain Fitness in Dechlorosoma suillum PS around Dsui_0933

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0931 and Dsui_0932 are separated by 15 nucleotidesDsui_0932 and Dsui_0933 are separated by 196 nucleotidesDsui_0933 and Dsui_0934 are separated by 167 nucleotidesDsui_0934 and Dsui_0935 are separated by 107 nucleotides Dsui_0931: Dsui_0931 - thiol-disulfide isomerase-like thioredoxin, at 959,966 to 960,472 _0931 Dsui_0932: Dsui_0932 - hypothetical protein, at 960,488 to 961,192 _0932 Dsui_0933: Dsui_0933 - DNA/RNA helicase, superfamily I, at 961,389 to 963,398 _0933 Dsui_0934: Dsui_0934 - hypothetical protein, at 963,566 to 963,862 _0934 Dsui_0935: Dsui_0935 - cytochrome c5, at 963,970 to 964,413 _0935 Position (kb) 961 962 963 964Strain fitness (log2 ratio) -1 0 1 2at 960.445 kb on + strandat 960.445 kb on + strandat 960.448 kb on - strandat 960.453 kb on - strandat 960.453 kb on - strandat 960.575 kb on + strand, within Dsui_0932at 960.597 kb on - strand, within Dsui_0932at 960.663 kb on - strand, within Dsui_0932at 960.711 kb on + strand, within Dsui_0932at 960.870 kb on - strand, within Dsui_0932at 961.001 kb on - strand, within Dsui_0932at 961.032 kb on - strandat 961.087 kb on - strand, within Dsui_0932at 961.089 kb on + strand, within Dsui_0932at 961.089 kb on + strand, within Dsui_0932at 961.089 kb on + strand, within Dsui_0932at 961.097 kb on - strand, within Dsui_0932at 961.097 kb on - strand, within Dsui_0932at 961.122 kb on - strandat 961.177 kb on - strandat 961.346 kb on - strandat 961.404 kb on + strandat 963.401 kb on - strandat 963.412 kb on - strandat 963.454 kb on - strandat 963.952 kb on + strandat 963.971 kb on + strandat 964.013 kb on - strandat 964.026 kb on + strand, within Dsui_0935at 964.077 kb on + strand, within Dsui_0935at 964.091 kb on - strand, within Dsui_0935at 964.132 kb on + strand, within Dsui_0935at 964.316 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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960,445 + -1.4
960,445 + -0.1
960,448 - -0.6
960,453 - +0.5
960,453 - -1.3
960,575 + Dsui_0932 0.12 +0.3
960,597 - Dsui_0932 0.15 -1.0
960,663 - Dsui_0932 0.25 -0.0
960,711 + Dsui_0932 0.32 -0.3
960,870 - Dsui_0932 0.54 -1.0
961,001 - Dsui_0932 0.73 +0.1
961,032 - +2.0
961,087 - Dsui_0932 0.85 +0.3
961,089 + Dsui_0932 0.85 -0.1
961,089 + Dsui_0932 0.85 +0.4
961,089 + Dsui_0932 0.85 +0.5
961,097 - Dsui_0932 0.86 +0.3
961,097 - Dsui_0932 0.86 -1.2
961,122 - -1.0
961,177 - +0.5
961,346 - -0.9
961,404 + -0.4
963,401 - -0.7
963,412 - +0.1
963,454 - +0.0
963,952 + -0.1
963,971 + -0.6
964,013 - +0.0
964,026 + Dsui_0935 0.13 +1.0
964,077 + Dsui_0935 0.24 -0.3
964,091 - Dsui_0935 0.27 +0.5
964,132 + Dsui_0935 0.36 +0.1
964,316 + +2.7

Or see this region's nucleotide sequence