Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0860 and Dsui_0861 are separated by 33 nucleotides Dsui_0861 and Dsui_0862 are separated by 40 nucleotides Dsui_0862 and Dsui_0863 are separated by 154 nucleotides Dsui_0863 and Dsui_0864 are separated by 40 nucleotides
Dsui_0860: Dsui_0860 - hypothetical protein, at 875,269 to 876,180
_0860
Dsui_0861: Dsui_0861 - ubiquinone/menaquinone biosynthesis methyltransferase, at 876,214 to 876,948
_0861
Dsui_0862: Dsui_0862 - hypothetical protein, at 876,989 to 877,414
_0862
Dsui_0863: Dsui_0863 - phosphate regulon transcriptional regulatory protein PhoB, at 877,569 to 878,261
_0863
Dsui_0864: Dsui_0864 - phosphate regulon sensor kinase PhoR, at 878,302 to 879,603
_0864
Position (kb) 876
877
878 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 876.133 kb on + strand at 876.154 kb on + strand at 876.164 kb on + strand at 876.164 kb on + strand at 876.995 kb on - strand at 876.995 kb on - strand at 876.995 kb on - strand at 877.090 kb on + strand, within Dsui_0862 at 877.120 kb on + strand at 877.164 kb on + strand, within Dsui_0862 at 877.286 kb on - strand, within Dsui_0862 at 877.412 kb on - strand at 877.424 kb on - strand at 877.442 kb on + strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.466 kb on + strand at 877.481 kb on - strand at 877.528 kb on + strand at 877.532 kb on - strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.556 kb on - strand at 877.558 kb on + strand at 877.572 kb on - strand at 877.575 kb on + strand at 877.591 kb on + strand at 877.602 kb on + strand at 877.610 kb on - strand at 877.645 kb on + strand, within Dsui_0863 at 877.649 kb on - strand, within Dsui_0863 at 877.716 kb on + strand, within Dsui_0863 at 877.787 kb on + strand, within Dsui_0863 at 877.812 kb on - strand at 877.850 kb on + strand, within Dsui_0863 at 877.850 kb on + strand, within Dsui_0863 at 877.913 kb on + strand, within Dsui_0863 at 877.915 kb on - strand, within Dsui_0863 at 877.918 kb on + strand, within Dsui_0863 at 877.931 kb on - strand at 877.950 kb on + strand, within Dsui_0863 at 878.038 kb on - strand, within Dsui_0863 at 878.045 kb on + strand, within Dsui_0863 at 878.114 kb on + strand, within Dsui_0863 at 878.114 kb on + strand, within Dsui_0863 at 878.122 kb on - strand, within Dsui_0863 at 878.122 kb on - strand, within Dsui_0863 at 878.157 kb on + strand, within Dsui_0863 at 878.157 kb on - strand at 878.189 kb on - strand, within Dsui_0863 at 878.210 kb on + strand at 878.228 kb on - strand at 878.312 kb on - strand at 878.346 kb on + strand at 878.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 876,133 + +1.4 876,154 + -0.4 876,164 + +1.5 876,164 + -0.7 876,995 - +0.0 876,995 - -0.2 876,995 - +0.5 877,090 + Dsui_0862 0.24 -0.6 877,120 + +3.0 877,164 + Dsui_0862 0.41 -0.3 877,286 - Dsui_0862 0.70 -1.0 877,412 - -1.8 877,424 - -0.4 877,442 + +0.1 877,463 - +0.1 877,463 - +0.4 877,463 - -0.3 877,463 - +0.5 877,466 + +1.6 877,481 - +0.1 877,528 + +0.7 877,532 - +0.1 877,548 + +0.8 877,548 + -0.0 877,548 + -0.5 877,548 + -0.0 877,556 - +2.0 877,558 + -0.4 877,572 - -0.7 877,575 + +0.7 877,591 + -0.8 877,602 + -0.1 877,610 - -0.0 877,645 + Dsui_0863 0.11 -0.3 877,649 - Dsui_0863 0.12 +0.6 877,716 + Dsui_0863 0.21 -0.0 877,787 + Dsui_0863 0.31 +1.3 877,812 - +2.0 877,850 + Dsui_0863 0.41 -0.1 877,850 + Dsui_0863 0.41 -0.5 877,913 + Dsui_0863 0.50 +2.0 877,915 - Dsui_0863 0.50 +0.1 877,918 + Dsui_0863 0.50 -0.2 877,931 - -0.0 877,950 + Dsui_0863 0.55 +0.5 878,038 - Dsui_0863 0.68 -0.4 878,045 + Dsui_0863 0.69 -0.6 878,114 + Dsui_0863 0.79 -0.1 878,114 + Dsui_0863 0.79 +0.3 878,122 - Dsui_0863 0.80 -0.2 878,122 - Dsui_0863 0.80 -1.0 878,157 + Dsui_0863 0.85 -0.9 878,157 - +0.7 878,189 - Dsui_0863 0.89 -1.0 878,210 + -2.3 878,228 - -0.5 878,312 - +0.2 878,346 + +0.0 878,358 + +0.2
Or see this region's nucleotide sequence