Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0673 and Dsui_0674 are separated by 34 nucleotides Dsui_0674 and Dsui_0675 are separated by 11 nucleotides Dsui_0675 and Dsui_0676 are separated by 77 nucleotides Dsui_0676 and Dsui_0677 overlap by 4 nucleotides
Dsui_0673: Dsui_0673 - arginyl-tRNA synthetase, at 671,862 to 673,604
_0673
Dsui_0674: Dsui_0674 - cell division protein, at 673,639 to 674,295
_0674
Dsui_0675: Dsui_0675 - putative dithiol-disulfide isomerase involved in polyketide biosynthesis, at 674,307 to 674,966
_0675
Dsui_0676: Dsui_0676 - short-chain dehydrogenase of unknown substrate specificity, at 675,044 to 675,817
_0676
Dsui_0677: Dsui_0677 - hypothetical protein, at 675,814 to 676,635
_0677
Position (kb) 674
675 Strain fitness (log2 ratio) -2
-1
0
1
2 at 673.617 kb on + strand at 673.617 kb on + strand at 673.629 kb on + strand at 673.636 kb on + strand at 674.250 kb on + strand at 674.250 kb on + strand at 674.312 kb on - strand at 674.336 kb on - strand at 674.400 kb on + strand, within Dsui_0675 at 674.469 kb on - strand at 674.516 kb on - strand at 674.595 kb on + strand, within Dsui_0675 at 674.708 kb on + strand, within Dsui_0675 at 674.878 kb on - strand at 674.884 kb on - strand at 674.906 kb on + strand at 675.059 kb on - strand at 675.060 kb on - strand at 675.067 kb on - strand at 675.067 kb on - strand at 675.137 kb on - strand at 675.559 kb on - strand, within Dsui_0676 at 675.618 kb on + strand, within Dsui_0676 at 675.627 kb on - strand, within Dsui_0676 at 675.760 kb on + strand at 675.780 kb on + strand at 675.784 kb on + strand at 675.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 673,617 + -0.7 673,617 + -2.2 673,629 + -0.6 673,636 + +0.1 674,250 + -1.1 674,250 + -0.9 674,312 - +0.2 674,336 - +1.9 674,400 + Dsui_0675 0.14 -1.8 674,469 - -0.1 674,516 - +0.3 674,595 + Dsui_0675 0.44 -1.4 674,708 + Dsui_0675 0.61 -2.0 674,878 - +0.9 674,884 - -0.1 674,906 + -1.1 675,059 - -0.5 675,060 - -0.6 675,067 - -1.0 675,067 - -0.1 675,137 - -1.1 675,559 - Dsui_0676 0.67 -0.7 675,618 + Dsui_0676 0.74 -0.8 675,627 - Dsui_0676 0.75 -0.8 675,760 + -1.5 675,780 + +0.3 675,784 + +1.5 675,788 - +1.3
Or see this region's nucleotide sequence