Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0628 and Dsui_0629 overlap by 4 nucleotides Dsui_0629 and Dsui_0630 are separated by 72 nucleotides Dsui_0630 and Dsui_0631 are separated by 189 nucleotides Dsui_0631 and Dsui_0632 are separated by 50 nucleotides
Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515
_0628
Dsui_0629: Dsui_0629 - branched-chain amino acid ABC-type transport system, permease component, at 622,512 to 623,435
_0629
Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812
_0630
Dsui_0631: Dsui_0631 - cytochrome c551/c552, at 625,002 to 625,310
_0631
Dsui_0632: Dsui_0632 - thioredoxin domain-containing protein, at 625,361 to 627,409
_0632
Position (kb) 623
624
625 Strain fitness (log2 ratio) -2
-1
0
1
2 at 622.510 kb on + strand at 622.510 kb on + strand at 622.511 kb on - strand at 622.595 kb on + strand at 622.676 kb on - strand, within Dsui_0629 at 622.857 kb on + strand, within Dsui_0629 at 622.880 kb on - strand, within Dsui_0629 at 622.920 kb on + strand, within Dsui_0629 at 622.928 kb on - strand, within Dsui_0629 at 623.013 kb on + strand, within Dsui_0629 at 623.057 kb on + strand, within Dsui_0629 at 623.132 kb on - strand at 623.280 kb on + strand, within Dsui_0629 at 623.285 kb on + strand, within Dsui_0629 at 623.344 kb on - strand at 623.372 kb on - strand at 623.396 kb on + strand at 623.396 kb on + strand at 623.644 kb on + strand, within Dsui_0630 at 623.659 kb on + strand, within Dsui_0630 at 623.785 kb on + strand, within Dsui_0630 at 623.785 kb on + strand, within Dsui_0630 at 623.948 kb on - strand, within Dsui_0630 at 623.948 kb on - strand, within Dsui_0630 at 624.004 kb on + strand, within Dsui_0630 at 624.124 kb on + strand at 624.124 kb on + strand, within Dsui_0630 at 624.170 kb on + strand, within Dsui_0630 at 624.178 kb on - strand, within Dsui_0630 at 624.223 kb on - strand, within Dsui_0630 at 624.290 kb on - strand, within Dsui_0630 at 624.295 kb on + strand, within Dsui_0630 at 624.355 kb on + strand at 624.447 kb on - strand, within Dsui_0630 at 624.460 kb on + strand, within Dsui_0630 at 624.468 kb on - strand, within Dsui_0630 at 624.491 kb on - strand, within Dsui_0630 at 624.496 kb on + strand, within Dsui_0630 at 624.504 kb on - strand, within Dsui_0630 at 624.506 kb on + strand, within Dsui_0630 at 624.547 kb on - strand, within Dsui_0630 at 624.559 kb on - strand, within Dsui_0630 at 624.654 kb on + strand, within Dsui_0630 at 624.777 kb on + strand at 624.780 kb on - strand at 624.790 kb on - strand at 624.793 kb on + strand at 625.011 kb on + strand at 625.019 kb on - strand at 625.021 kb on + strand at 625.127 kb on - strand, within Dsui_0631 at 625.230 kb on + strand, within Dsui_0631 at 625.250 kb on + strand, within Dsui_0631 at 625.401 kb on + strand at 625.603 kb on + strand, within Dsui_0632 at 625.685 kb on - strand, within Dsui_0632 at 625.741 kb on - strand, within Dsui_0632 at 625.748 kb on + strand, within Dsui_0632 at 625.793 kb on + strand, within Dsui_0632
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 622,510 + -0.4 622,510 + -0.0 622,511 - -0.2 622,595 + -1.8 622,676 - Dsui_0629 0.18 +0.1 622,857 + Dsui_0629 0.37 +0.2 622,880 - Dsui_0629 0.40 -0.5 622,920 + Dsui_0629 0.44 -0.5 622,928 - Dsui_0629 0.45 +0.3 623,013 + Dsui_0629 0.54 -2.1 623,057 + Dsui_0629 0.59 +0.4 623,132 - +0.4 623,280 + Dsui_0629 0.83 -0.3 623,285 + Dsui_0629 0.84 -0.8 623,344 - -0.5 623,372 - -0.5 623,396 + -1.4 623,396 + +0.4 623,644 + Dsui_0630 0.10 +0.1 623,659 + Dsui_0630 0.12 -0.7 623,785 + Dsui_0630 0.21 -0.4 623,785 + Dsui_0630 0.21 -0.3 623,948 - Dsui_0630 0.34 -0.5 623,948 - Dsui_0630 0.34 -0.6 624,004 + Dsui_0630 0.38 +0.2 624,124 + +1.0 624,124 + Dsui_0630 0.47 +1.6 624,170 + Dsui_0630 0.51 +1.1 624,178 - Dsui_0630 0.51 -0.3 624,223 - Dsui_0630 0.55 -2.3 624,290 - Dsui_0630 0.60 -0.3 624,295 + Dsui_0630 0.60 +0.2 624,355 + +2.0 624,447 - Dsui_0630 0.72 +0.1 624,460 + Dsui_0630 0.73 -0.2 624,468 - Dsui_0630 0.74 -1.7 624,491 - Dsui_0630 0.75 -0.2 624,496 + Dsui_0630 0.76 +0.2 624,504 - Dsui_0630 0.76 +0.1 624,506 + Dsui_0630 0.76 +2.0 624,547 - Dsui_0630 0.80 -0.8 624,559 - Dsui_0630 0.81 -1.4 624,654 + Dsui_0630 0.88 -0.1 624,777 + -0.4 624,780 - -0.2 624,790 - -0.1 624,793 + -0.2 625,011 + +0.2 625,019 - +0.1 625,021 + -0.4 625,127 - Dsui_0631 0.40 +0.2 625,230 + Dsui_0631 0.74 -1.4 625,250 + Dsui_0631 0.80 +0.5 625,401 + +1.4 625,603 + Dsui_0632 0.12 -0.2 625,685 - Dsui_0632 0.16 -0.6 625,741 - Dsui_0632 0.19 -0.6 625,748 + Dsui_0632 0.19 -1.2 625,793 + Dsui_0632 0.21 -1.0
Or see this region's nucleotide sequence