Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0611 and Dsui_0612 are separated by 315 nucleotides Dsui_0612 and Dsui_0613 are separated by 242 nucleotides Dsui_0613 and Dsui_0614 overlap by 4 nucleotides Dsui_0614 and Dsui_0615 overlap by 38 nucleotides
Dsui_0611: Dsui_0611 - phosphotransferase system cellobiose-specific component IIC, at 606,076 to 608,163
_0611
Dsui_0612: Dsui_0612 - hypothetical protein, at 608,479 to 608,775
_0612
Dsui_0613: Dsui_0613 - uncharacterized protein SCO1/SenC/PrrC, at 609,018 to 609,569
_0613
Dsui_0614: Dsui_0614 - hypothetical protein, at 609,566 to 609,901
_0614
Dsui_0615: Dsui_0615 - ABC-type transport system, involved in lipoprotein release, permease component, at 609,864 to 611,000
_0615
Position (kb) 609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 608.028 kb on + strand at 608.043 kb on + strand at 608.082 kb on + strand at 608.090 kb on - strand at 608.175 kb on - strand at 608.213 kb on + strand at 608.213 kb on + strand at 608.221 kb on - strand at 608.334 kb on + strand at 608.460 kb on + strand at 608.478 kb on - strand at 608.478 kb on - strand at 608.976 kb on + strand at 609.066 kb on - strand at 609.273 kb on + strand, within Dsui_0613 at 609.560 kb on - strand at 609.561 kb on - strand at 609.622 kb on + strand, within Dsui_0614 at 609.768 kb on - strand, within Dsui_0614 at 609.869 kb on + strand at 609.905 kb on + strand at 609.923 kb on - strand at 609.949 kb on - strand at 610.053 kb on - strand, within Dsui_0615 at 610.081 kb on + strand, within Dsui_0615 at 610.166 kb on + strand, within Dsui_0615 at 610.181 kb on + strand, within Dsui_0615 at 610.191 kb on + strand, within Dsui_0615 at 610.200 kb on - strand, within Dsui_0615 at 610.328 kb on - strand, within Dsui_0615 at 610.375 kb on - strand, within Dsui_0615 at 610.552 kb on - strand, within Dsui_0615
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 608,028 + -0.6 608,043 + -1.0 608,082 + -0.2 608,090 - +0.1 608,175 - -0.3 608,213 + +0.1 608,213 + -0.3 608,221 - -0.2 608,334 + -0.6 608,460 + -1.3 608,478 - +0.3 608,478 - -0.3 608,976 + -0.7 609,066 - -0.1 609,273 + Dsui_0613 0.46 -3.0 609,560 - +0.1 609,561 - -2.9 609,622 + Dsui_0614 0.17 -0.4 609,768 - Dsui_0614 0.60 -0.7 609,869 + -0.1 609,905 + -0.5 609,923 - +2.0 609,949 - +2.0 610,053 - Dsui_0615 0.17 +0.2 610,081 + Dsui_0615 0.19 -0.8 610,166 + Dsui_0615 0.27 -0.9 610,181 + Dsui_0615 0.28 -0.7 610,191 + Dsui_0615 0.29 -0.6 610,200 - Dsui_0615 0.30 -0.7 610,328 - Dsui_0615 0.41 +0.1 610,375 - Dsui_0615 0.45 -0.4 610,552 - Dsui_0615 0.61 +0.1
Or see this region's nucleotide sequence