Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0605 and Dsui_0606 are separated by 84 nucleotides Dsui_0606 and Dsui_0607 are separated by 11 nucleotides Dsui_0607 and Dsui_0608 overlap by 7 nucleotides
Dsui_0605: Dsui_0605 - pilus retraction protein PilT, at 600,038 to 601,174
_0605
Dsui_0606: Dsui_0606 - putative N6-adenine-specific DNA methylase, at 601,259 to 602,431
_0606
Dsui_0607: Dsui_0607 - putative membrane protein, at 602,443 to 602,859
_0607
Dsui_0608: Dsui_0608 - nucleoside-diphosphate-sugar epimerase, at 602,853 to 603,758
_0608
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1 at 600.418 kb on + strand, within Dsui_0605 at 600.545 kb on - strand, within Dsui_0605 at 600.553 kb on - strand, within Dsui_0605 at 600.695 kb on - strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.860 kb on - strand, within Dsui_0605 at 600.968 kb on - strand, within Dsui_0605 at 601.245 kb on - strand at 601.258 kb on - strand at 601.310 kb on - strand at 601.314 kb on + strand at 601.407 kb on - strand, within Dsui_0606 at 601.445 kb on - strand, within Dsui_0606 at 601.560 kb on + strand, within Dsui_0606 at 601.697 kb on + strand, within Dsui_0606 at 601.702 kb on + strand, within Dsui_0606 at 601.882 kb on + strand at 601.986 kb on + strand, within Dsui_0606 at 602.163 kb on - strand, within Dsui_0606 at 602.264 kb on - strand, within Dsui_0606 at 602.313 kb on - strand, within Dsui_0606 at 602.439 kb on + strand at 602.447 kb on - strand at 602.894 kb on + strand at 602.905 kb on + strand at 603.018 kb on + strand at 603.041 kb on + strand, within Dsui_0608 at 603.207 kb on - strand, within Dsui_0608 at 603.207 kb on - strand, within Dsui_0608 at 603.288 kb on - strand, within Dsui_0608 at 603.394 kb on + strand at 603.394 kb on + strand, within Dsui_0608 at 603.417 kb on - strand, within Dsui_0608
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 600,418 + Dsui_0605 0.33 -0.1 600,545 - Dsui_0605 0.45 -0.4 600,553 - Dsui_0605 0.45 +1.0 600,695 - Dsui_0605 0.58 +0.8 600,828 + Dsui_0605 0.69 -0.6 600,828 + Dsui_0605 0.69 -0.5 600,828 + Dsui_0605 0.69 +0.1 600,836 - Dsui_0605 0.70 +0.4 600,836 - Dsui_0605 0.70 +1.0 600,836 - Dsui_0605 0.70 -0.1 600,860 - Dsui_0605 0.72 +0.3 600,968 - Dsui_0605 0.82 -0.9 601,245 - -0.1 601,258 - +1.7 601,310 - -0.6 601,314 + -0.6 601,407 - Dsui_0606 0.13 -0.3 601,445 - Dsui_0606 0.16 +0.4 601,560 + Dsui_0606 0.26 +0.0 601,697 + Dsui_0606 0.37 +0.5 601,702 + Dsui_0606 0.38 -1.0 601,882 + -0.6 601,986 + Dsui_0606 0.62 +1.3 602,163 - Dsui_0606 0.77 -1.4 602,264 - Dsui_0606 0.86 -0.6 602,313 - Dsui_0606 0.90 -0.5 602,439 + -0.2 602,447 - -0.3 602,894 + +1.0 602,905 + -1.6 603,018 + -0.0 603,041 + Dsui_0608 0.21 -1.5 603,207 - Dsui_0608 0.39 -1.8 603,207 - Dsui_0608 0.39 -1.3 603,288 - Dsui_0608 0.48 -0.3 603,394 + -0.0 603,394 + Dsui_0608 0.60 -0.1 603,417 - Dsui_0608 0.62 -1.7
Or see this region's nucleotide sequence