Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0529 and Dsui_0530 are separated by 23 nucleotides Dsui_0530 and Dsui_0531 overlap by 4 nucleotides Dsui_0531 and Dsui_0532 are separated by 58 nucleotides
Dsui_0529: Dsui_0529 - outer membrane cobalamin receptor protein, at 533,972 to 535,936
_0529
Dsui_0530: Dsui_0530 - ABC-type Fe3+-siderophore transport system, permease component, at 535,960 to 536,940
_0530
Dsui_0531: Dsui_0531 - ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component, at 536,937 to 537,707
_0531
Dsui_0532: Dsui_0532 - cob(I)alamin adenosyltransferase, at 537,766 to 538,368
_0532
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 534.986 kb on - strand, within Dsui_0529 at 535.008 kb on + strand, within Dsui_0529 at 535.023 kb on + strand, within Dsui_0529 at 535.056 kb on + strand, within Dsui_0529 at 535.056 kb on + strand, within Dsui_0529 at 535.081 kb on + strand, within Dsui_0529 at 535.098 kb on + strand, within Dsui_0529 at 535.188 kb on + strand, within Dsui_0529 at 535.217 kb on - strand, within Dsui_0529 at 535.220 kb on + strand, within Dsui_0529 at 535.271 kb on + strand, within Dsui_0529 at 535.285 kb on - strand, within Dsui_0529 at 535.306 kb on - strand at 535.405 kb on - strand, within Dsui_0529 at 535.423 kb on + strand, within Dsui_0529 at 535.428 kb on + strand, within Dsui_0529 at 535.433 kb on + strand, within Dsui_0529 at 535.441 kb on - strand, within Dsui_0529 at 535.661 kb on - strand, within Dsui_0529 at 535.678 kb on + strand, within Dsui_0529 at 535.693 kb on - strand, within Dsui_0529 at 535.764 kb on + strand at 535.847 kb on - strand at 535.889 kb on - strand at 535.889 kb on - strand at 535.943 kb on + strand at 536.023 kb on - strand at 536.119 kb on + strand, within Dsui_0530 at 536.180 kb on - strand, within Dsui_0530 at 536.236 kb on - strand, within Dsui_0530 at 536.241 kb on - strand, within Dsui_0530 at 536.361 kb on + strand, within Dsui_0530 at 536.451 kb on - strand at 536.467 kb on + strand, within Dsui_0530 at 536.519 kb on - strand, within Dsui_0530 at 536.620 kb on + strand, within Dsui_0530 at 536.628 kb on - strand, within Dsui_0530 at 536.659 kb on - strand, within Dsui_0530 at 536.902 kb on + strand at 536.917 kb on + strand at 536.943 kb on + strand at 536.952 kb on - strand at 536.998 kb on - strand at 537.024 kb on + strand, within Dsui_0531 at 537.064 kb on + strand, within Dsui_0531 at 537.136 kb on + strand, within Dsui_0531 at 537.186 kb on + strand, within Dsui_0531 at 537.291 kb on + strand, within Dsui_0531 at 537.296 kb on + strand, within Dsui_0531 at 537.299 kb on - strand, within Dsui_0531 at 537.304 kb on - strand at 537.321 kb on + strand, within Dsui_0531 at 537.472 kb on + strand, within Dsui_0531 at 537.645 kb on + strand at 537.677 kb on - strand at 537.682 kb on - strand at 537.836 kb on - strand at 537.899 kb on - strand, within Dsui_0532 at 537.899 kb on - strand, within Dsui_0532 at 537.937 kb on - strand, within Dsui_0532
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 534,986 - Dsui_0529 0.52 -0.7 535,008 + Dsui_0529 0.53 -0.3 535,023 + Dsui_0529 0.53 -0.5 535,056 + Dsui_0529 0.55 -0.2 535,056 + Dsui_0529 0.55 +1.1 535,081 + Dsui_0529 0.56 -1.3 535,098 + Dsui_0529 0.57 -0.4 535,188 + Dsui_0529 0.62 +0.6 535,217 - Dsui_0529 0.63 -1.0 535,220 + Dsui_0529 0.64 +2.1 535,271 + Dsui_0529 0.66 -0.5 535,285 - Dsui_0529 0.67 -1.5 535,306 - +0.7 535,405 - Dsui_0529 0.73 -1.5 535,423 + Dsui_0529 0.74 -0.4 535,428 + Dsui_0529 0.74 -0.3 535,433 + Dsui_0529 0.74 +0.7 535,441 - Dsui_0529 0.75 -1.3 535,661 - Dsui_0529 0.86 -0.7 535,678 + Dsui_0529 0.87 -1.0 535,693 - Dsui_0529 0.88 -0.7 535,764 + +0.0 535,847 - -1.0 535,889 - -1.3 535,889 - +1.0 535,943 + -0.8 536,023 - -0.1 536,119 + Dsui_0530 0.16 -0.5 536,180 - Dsui_0530 0.22 -3.0 536,236 - Dsui_0530 0.28 -1.7 536,241 - Dsui_0530 0.29 -2.0 536,361 + Dsui_0530 0.41 +1.5 536,451 - +1.0 536,467 + Dsui_0530 0.52 +0.0 536,519 - Dsui_0530 0.57 -1.0 536,620 + Dsui_0530 0.67 +0.7 536,628 - Dsui_0530 0.68 +0.3 536,659 - Dsui_0530 0.71 -0.3 536,902 + -0.5 536,917 + -0.6 536,943 + +0.0 536,952 - +0.5 536,998 - +0.2 537,024 + Dsui_0531 0.11 +1.6 537,064 + Dsui_0531 0.16 +0.5 537,136 + Dsui_0531 0.26 -0.3 537,186 + Dsui_0531 0.32 -0.7 537,291 + Dsui_0531 0.46 -0.6 537,296 + Dsui_0531 0.47 -0.6 537,299 - Dsui_0531 0.47 -0.9 537,304 - +1.0 537,321 + Dsui_0531 0.50 -1.6 537,472 + Dsui_0531 0.69 +0.1 537,645 + -1.6 537,677 - -0.9 537,682 - +0.0 537,836 - +1.1 537,899 - Dsui_0532 0.22 -0.3 537,899 - Dsui_0532 0.22 +0.1 537,937 - Dsui_0532 0.28 -1.8
Or see this region's nucleotide sequence