Strain Fitness in Dechlorosoma suillum PS around Dsui_0521

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0520 and Dsui_0521 are separated by 75 nucleotidesDsui_0521 and Dsui_0522 are separated by 94 nucleotides Dsui_0520: Dsui_0520 - transcriptional regulator, at 527,564 to 528,220 _0520 Dsui_0521: Dsui_0521 - enoyl-CoA hydratase/carnithine racemase, at 528,296 to 529,072 _0521 Dsui_0522: Dsui_0522 - SSS sodium solute transporter, at 529,167 to 530,840 _0522 Position (kb) 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1at 527.302 kb on - strandat 527.511 kb on - strandat 527.563 kb on + strandat 527.674 kb on + strand, within Dsui_0520at 527.720 kb on + strand, within Dsui_0520at 527.754 kb on + strand, within Dsui_0520at 527.791 kb on + strand, within Dsui_0520at 527.791 kb on + strand, within Dsui_0520at 527.883 kb on + strand, within Dsui_0520at 527.952 kb on + strand, within Dsui_0520at 527.953 kb on + strand, within Dsui_0520at 527.960 kb on - strand, within Dsui_0520at 527.960 kb on - strand, within Dsui_0520at 528.101 kb on + strand, within Dsui_0520at 528.168 kb on - strandat 528.194 kb on + strandat 528.205 kb on + strandat 528.207 kb on - strandat 528.347 kb on - strandat 528.347 kb on - strandat 528.429 kb on + strand, within Dsui_0521at 528.442 kb on - strand, within Dsui_0521at 528.530 kb on + strand, within Dsui_0521at 528.594 kb on + strand, within Dsui_0521at 528.596 kb on - strand, within Dsui_0521at 528.599 kb on + strand, within Dsui_0521at 528.692 kb on + strand, within Dsui_0521at 528.827 kb on + strand, within Dsui_0521at 528.846 kb on - strand, within Dsui_0521at 528.854 kb on + strand, within Dsui_0521at 528.856 kb on + strand, within Dsui_0521at 528.940 kb on + strand, within Dsui_0521at 528.967 kb on - strand, within Dsui_0521at 528.967 kb on - strand, within Dsui_0521at 529.045 kb on + strandat 529.055 kb on + strandat 529.123 kb on - strandat 529.200 kb on + strandat 529.200 kb on + strandat 529.247 kb on + strandat 529.296 kb on + strandat 529.304 kb on - strandat 529.306 kb on + strandat 529.319 kb on - strandat 529.348 kb on + strand, within Dsui_0522at 529.375 kb on + strand, within Dsui_0522at 529.375 kb on + strand, within Dsui_0522at 529.375 kb on + strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.439 kb on + strand, within Dsui_0522at 529.467 kb on + strand, within Dsui_0522at 529.481 kb on - strand, within Dsui_0522at 529.551 kb on + strand, within Dsui_0522at 529.613 kb on + strand, within Dsui_0522at 529.632 kb on - strand, within Dsui_0522at 529.662 kb on - strand, within Dsui_0522at 529.669 kb on - strand, within Dsui_0522at 529.681 kb on - strand, within Dsui_0522at 529.743 kb on - strand, within Dsui_0522at 529.781 kb on + strand, within Dsui_0522at 529.819 kb on + strand, within Dsui_0522at 529.855 kb on + strand, within Dsui_0522at 529.868 kb on - strand, within Dsui_0522at 529.873 kb on - strand, within Dsui_0522at 530.025 kb on + strand, within Dsui_0522at 530.046 kb on - strand, within Dsui_0522at 530.046 kb on - strand, within Dsui_0522at 530.071 kb on + strand, within Dsui_0522

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
527,302 - -0.3
527,511 - -0.5
527,563 + -0.4
527,674 + Dsui_0520 0.17 -2.3
527,720 + Dsui_0520 0.24 -1.6
527,754 + Dsui_0520 0.29 -3.0
527,791 + Dsui_0520 0.35 -2.0
527,791 + Dsui_0520 0.35 -2.4
527,883 + Dsui_0520 0.49 -2.6
527,952 + Dsui_0520 0.59 -1.6
527,953 + Dsui_0520 0.59 -1.9
527,960 - Dsui_0520 0.60 -1.9
527,960 - Dsui_0520 0.60 -3.2
528,101 + Dsui_0520 0.82 -1.4
528,168 - -1.6
528,194 + -1.8
528,205 + -0.8
528,207 - -0.4
528,347 - -0.4
528,347 - -1.6
528,429 + Dsui_0521 0.17 -1.8
528,442 - Dsui_0521 0.19 -0.9
528,530 + Dsui_0521 0.30 -1.8
528,594 + Dsui_0521 0.38 -0.8
528,596 - Dsui_0521 0.39 -2.3
528,599 + Dsui_0521 0.39 -1.1
528,692 + Dsui_0521 0.51 -1.2
528,827 + Dsui_0521 0.68 -0.4
528,846 - Dsui_0521 0.71 -0.7
528,854 + Dsui_0521 0.72 -0.6
528,856 + Dsui_0521 0.72 -0.2
528,940 + Dsui_0521 0.83 +0.1
528,967 - Dsui_0521 0.86 -1.4
528,967 - Dsui_0521 0.86 -1.2
529,045 + -0.3
529,055 + -0.2
529,123 - -2.5
529,200 + +0.5
529,200 + +0.2
529,247 + -0.1
529,296 + -0.8
529,304 - -2.0
529,306 + -0.3
529,319 - -1.5
529,348 + Dsui_0522 0.11 -0.7
529,375 + Dsui_0522 0.12 -0.6
529,375 + Dsui_0522 0.12 -1.1
529,375 + Dsui_0522 0.12 -0.3
529,383 - Dsui_0522 0.13 -1.4
529,383 - Dsui_0522 0.13 -1.5
529,383 - Dsui_0522 0.13 -0.9
529,383 - Dsui_0522 0.13 -1.5
529,383 - Dsui_0522 0.13 -1.1
529,439 + Dsui_0522 0.16 +1.1
529,467 + Dsui_0522 0.18 -0.2
529,481 - Dsui_0522 0.19 -0.9
529,551 + Dsui_0522 0.23 -0.7
529,613 + Dsui_0522 0.27 -0.3
529,632 - Dsui_0522 0.28 -0.5
529,662 - Dsui_0522 0.30 -0.9
529,669 - Dsui_0522 0.30 -0.5
529,681 - Dsui_0522 0.31 -1.1
529,743 - Dsui_0522 0.34 +0.5
529,781 + Dsui_0522 0.37 -0.6
529,819 + Dsui_0522 0.39 -0.4
529,855 + Dsui_0522 0.41 -0.9
529,868 - Dsui_0522 0.42 -0.3
529,873 - Dsui_0522 0.42 -1.5
530,025 + Dsui_0522 0.51 -0.1
530,046 - Dsui_0522 0.53 -1.1
530,046 - Dsui_0522 0.53 -0.6
530,071 + Dsui_0522 0.54 -1.0

Or see this region's nucleotide sequence