Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0509 and Dsui_0510 overlap by 4 nucleotides Dsui_0510 and Dsui_0511 are separated by 10 nucleotides Dsui_0511 and Dsui_0512 are separated by 318 nucleotides Dsui_0512 and Dsui_0513 are separated by 80 nucleotides
Dsui_0509: Dsui_0509 - MauM/NapG family ferredoxin-type protein, at 513,684 to 514,664
_0509
Dsui_0510: Dsui_0510 - ferredoxin-type protein, NapH/MauN family, at 514,661 to 515,581
_0510
Dsui_0511: Dsui_0511 - nitrate reductase cytochrome c-type subunit, at 515,592 to 516,068
_0511
Dsui_0512: Dsui_0512 - Methylmalonyl-CoA epimerase (EC 5.1.99.1) <small>(from data)</small>, at 516,387 to 516,863
_0512
Dsui_0513: Dsui_0513 - diguanylate cyclase (GGDEF) domain-containing protein, at 516,944 to 518,818
_0513
Position (kb) 515
516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 514.827 kb on - strand at 514.840 kb on - strand at 514.854 kb on - strand, within Dsui_0510 at 514.905 kb on + strand, within Dsui_0510 at 514.971 kb on + strand, within Dsui_0510 at 515.041 kb on - strand, within Dsui_0510 at 515.124 kb on + strand, within Dsui_0510 at 515.125 kb on - strand at 515.162 kb on + strand, within Dsui_0510 at 515.516 kb on + strand at 515.558 kb on + strand at 515.615 kb on - strand at 515.770 kb on + strand, within Dsui_0511 at 515.778 kb on - strand, within Dsui_0511 at 515.868 kb on - strand, within Dsui_0511 at 515.957 kb on + strand, within Dsui_0511 at 516.055 kb on - strand at 516.062 kb on + strand at 516.070 kb on - strand at 516.391 kb on - strand at 516.391 kb on - strand at 516.415 kb on + strand at 516.425 kb on - strand at 516.455 kb on + strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.533 kb on + strand, within Dsui_0512 at 516.555 kb on + strand, within Dsui_0512 at 516.622 kb on + strand, within Dsui_0512 at 516.627 kb on + strand, within Dsui_0512 at 516.627 kb on + strand, within Dsui_0512 at 516.627 kb on + strand, within Dsui_0512 at 516.635 kb on - strand, within Dsui_0512 at 516.662 kb on + strand, within Dsui_0512 at 516.662 kb on + strand, within Dsui_0512 at 516.670 kb on - strand, within Dsui_0512 at 516.670 kb on - strand, within Dsui_0512 at 516.670 kb on - strand, within Dsui_0512 at 516.694 kb on - strand, within Dsui_0512 at 516.727 kb on - strand, within Dsui_0512 at 516.727 kb on - strand, within Dsui_0512 at 516.761 kb on - strand, within Dsui_0512 at 516.790 kb on + strand, within Dsui_0512 at 516.852 kb on + strand at 516.880 kb on - strand at 516.930 kb on - strand at 516.955 kb on + strand at 517.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 514,827 - +2.1 514,840 - +0.1 514,854 - Dsui_0510 0.21 -0.9 514,905 + Dsui_0510 0.26 -1.8 514,971 + Dsui_0510 0.34 -2.4 515,041 - Dsui_0510 0.41 -1.3 515,124 + Dsui_0510 0.50 -1.9 515,125 - +0.5 515,162 + Dsui_0510 0.54 -1.9 515,516 + -3.6 515,558 + -1.8 515,615 - -0.3 515,770 + Dsui_0511 0.37 -0.5 515,778 - Dsui_0511 0.39 -1.9 515,868 - Dsui_0511 0.58 -1.8 515,957 + Dsui_0511 0.77 -2.3 516,055 - -0.7 516,062 + -0.8 516,070 - +0.2 516,391 - -0.8 516,391 - -0.7 516,415 + -0.3 516,425 - +0.1 516,455 + Dsui_0512 0.14 -1.4 516,463 - Dsui_0512 0.16 +0.3 516,463 - Dsui_0512 0.16 +0.5 516,533 + Dsui_0512 0.31 +0.8 516,555 + Dsui_0512 0.35 -0.3 516,622 + Dsui_0512 0.49 -1.3 516,627 + Dsui_0512 0.50 +0.5 516,627 + Dsui_0512 0.50 -0.4 516,627 + Dsui_0512 0.50 -1.0 516,635 - Dsui_0512 0.52 +0.3 516,662 + Dsui_0512 0.58 -1.5 516,662 + Dsui_0512 0.58 +0.2 516,670 - Dsui_0512 0.59 -0.8 516,670 - Dsui_0512 0.59 -0.3 516,670 - Dsui_0512 0.59 -0.5 516,694 - Dsui_0512 0.64 -0.4 516,727 - Dsui_0512 0.71 -0.8 516,727 - Dsui_0512 0.71 -0.2 516,761 - Dsui_0512 0.78 -0.5 516,790 + Dsui_0512 0.84 +0.1 516,852 + -0.5 516,880 - -0.2 516,930 - -0.6 516,955 + +0.5 517,029 - -1.1
Or see this region's nucleotide sequence