Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0506 and Dsui_0507 are separated by 301 nucleotides Dsui_0507 and Dsui_0508 are separated by 1 nucleotides
Dsui_0506: Dsui_0506 - diguanylate cyclase (GGDEF) domain-containing protein, at 508,316 to 510,517
_0506
Dsui_0507: Dsui_0507 - uncharacterized protein involved in formation of periplasmic nitrate reductase, at 510,819 to 511,067
_0507
Dsui_0508: Dsui_0508 - periplasmic nitrate reductase, large subunit, at 511,069 to 513,594
_0508
Position (kb) 510
511
512 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 509.822 kb on - strand, within Dsui_0506 at 509.932 kb on + strand at 509.932 kb on + strand, within Dsui_0506 at 509.932 kb on + strand, within Dsui_0506 at 509.935 kb on - strand, within Dsui_0506 at 509.940 kb on - strand, within Dsui_0506 at 509.980 kb on + strand, within Dsui_0506 at 510.058 kb on - strand, within Dsui_0506 at 510.097 kb on - strand, within Dsui_0506 at 510.134 kb on - strand, within Dsui_0506 at 510.139 kb on + strand, within Dsui_0506 at 510.147 kb on - strand, within Dsui_0506 at 510.282 kb on + strand, within Dsui_0506 at 510.287 kb on + strand at 510.290 kb on - strand, within Dsui_0506 at 510.325 kb on - strand at 510.334 kb on + strand at 510.334 kb on + strand at 510.342 kb on - strand at 510.361 kb on + strand at 510.361 kb on + strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.409 kb on + strand at 510.452 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.600 kb on - strand at 510.644 kb on + strand at 510.659 kb on + strand at 510.699 kb on - strand at 510.699 kb on - strand at 510.754 kb on + strand at 510.762 kb on - strand at 510.762 kb on - strand at 510.773 kb on - strand at 510.847 kb on - strand, within Dsui_0507 at 510.879 kb on + strand, within Dsui_0507 at 510.916 kb on + strand, within Dsui_0507 at 510.979 kb on + strand, within Dsui_0507 at 511.022 kb on - strand, within Dsui_0507 at 511.072 kb on + strand at 511.314 kb on - strand at 511.317 kb on + strand at 511.366 kb on + strand, within Dsui_0508 at 511.430 kb on + strand, within Dsui_0508 at 511.464 kb on + strand, within Dsui_0508 at 511.608 kb on + strand, within Dsui_0508 at 511.623 kb on - strand, within Dsui_0508 at 511.749 kb on - strand, within Dsui_0508 at 511.775 kb on - strand, within Dsui_0508 at 511.900 kb on + strand, within Dsui_0508 at 511.900 kb on + strand, within Dsui_0508 at 511.973 kb on + strand, within Dsui_0508 at 512.005 kb on - strand, within Dsui_0508 at 512.009 kb on - strand, within Dsui_0508 at 512.054 kb on - strand, within Dsui_0508 at 512.054 kb on - strand, within Dsui_0508 at 512.054 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 509,822 - Dsui_0506 0.68 +0.2 509,932 + +0.5 509,932 + Dsui_0506 0.73 +0.1 509,932 + Dsui_0506 0.73 +0.3 509,935 - Dsui_0506 0.74 -0.2 509,940 - Dsui_0506 0.74 -0.1 509,980 + Dsui_0506 0.76 -0.4 510,058 - Dsui_0506 0.79 -0.3 510,097 - Dsui_0506 0.81 +0.1 510,134 - Dsui_0506 0.83 -0.5 510,139 + Dsui_0506 0.83 +0.2 510,147 - Dsui_0506 0.83 -0.3 510,282 + Dsui_0506 0.89 -1.2 510,287 + +0.1 510,290 - Dsui_0506 0.90 -0.5 510,325 - -0.2 510,334 + +2.1 510,334 + +0.7 510,342 - -0.3 510,361 + -0.9 510,361 + +0.1 510,369 - -0.2 510,369 - +0.4 510,369 - +1.0 510,369 - +0.5 510,369 - +2.4 510,409 + +0.4 510,452 + +0.8 510,512 + -0.5 510,512 + -0.4 510,512 + +0.3 510,512 + +0.2 510,600 - +0.3 510,644 + -0.0 510,659 + +0.3 510,699 - +1.4 510,699 - +1.6 510,754 + -1.8 510,762 - -1.6 510,762 - +1.1 510,773 - -2.2 510,847 - Dsui_0507 0.11 -1.7 510,879 + Dsui_0507 0.24 -4.0 510,916 + Dsui_0507 0.39 -0.5 510,979 + Dsui_0507 0.64 +0.1 511,022 - Dsui_0507 0.82 -1.1 511,072 + -3.0 511,314 - -2.2 511,317 + +0.5 511,366 + Dsui_0508 0.12 -4.1 511,430 + Dsui_0508 0.14 -2.6 511,464 + Dsui_0508 0.16 -2.5 511,608 + Dsui_0508 0.21 -1.6 511,623 - Dsui_0508 0.22 -3.7 511,749 - Dsui_0508 0.27 -1.1 511,775 - Dsui_0508 0.28 -2.1 511,900 + Dsui_0508 0.33 -1.3 511,900 + Dsui_0508 0.33 -2.2 511,973 + Dsui_0508 0.36 -1.3 512,005 - Dsui_0508 0.37 -3.3 512,009 - Dsui_0508 0.37 -1.1 512,054 - Dsui_0508 0.39 -2.2 512,054 - Dsui_0508 0.39 -2.1 512,054 - +0.1
Or see this region's nucleotide sequence