Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0492 and Dsui_0493 are separated by 5 nucleotides Dsui_0493 and Dsui_0494 are separated by 13 nucleotides Dsui_0494 and Dsui_0495 are separated by 9 nucleotides Dsui_0495 and Dsui_0496 overlap by 4 nucleotides
Dsui_0492: Dsui_0492 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family, at 495,241 to 495,831
_0492
Dsui_0493: Dsui_0493 - hypothetical protein, at 495,837 to 496,745
_0493
Dsui_0494: Dsui_0494 - ribonuclease PH, at 496,759 to 497,475
_0494
Dsui_0495: Dsui_0495 - serine/threonine protein phosphatase, at 497,485 to 498,396
_0495
Dsui_0496: Dsui_0496 - serine/threonine protein kinase, at 498,393 to 499,358
_0496
Position (kb) 496
497
498 Strain fitness (log2 ratio) -2
-1
0
1 at 495.765 kb on - strand, within Dsui_0492 at 495.772 kb on - strand, within Dsui_0492 at 495.772 kb on - strand, within Dsui_0492 at 495.775 kb on + strand at 495.808 kb on - strand at 495.828 kb on + strand at 495.833 kb on + strand at 495.833 kb on + strand at 495.833 kb on + strand at 495.841 kb on - strand at 495.841 kb on - strand at 496.081 kb on - strand, within Dsui_0493 at 496.255 kb on + strand, within Dsui_0493 at 496.277 kb on + strand, within Dsui_0493 at 496.526 kb on - strand, within Dsui_0493 at 496.639 kb on + strand, within Dsui_0493 at 496.647 kb on - strand, within Dsui_0493 at 496.668 kb on - strand at 496.878 kb on - strand, within Dsui_0494 at 497.152 kb on + strand, within Dsui_0494 at 497.159 kb on - strand, within Dsui_0494 at 497.244 kb on - strand, within Dsui_0494 at 497.270 kb on + strand, within Dsui_0494 at 497.305 kb on + strand, within Dsui_0494 at 497.357 kb on + strand, within Dsui_0494 at 497.357 kb on + strand, within Dsui_0494 at 497.359 kb on + strand, within Dsui_0494 at 497.359 kb on + strand, within Dsui_0494 at 497.365 kb on - strand, within Dsui_0494 at 497.365 kb on - strand, within Dsui_0494 at 497.392 kb on + strand, within Dsui_0494 at 497.567 kb on + strand at 497.662 kb on - strand, within Dsui_0495 at 497.662 kb on - strand, within Dsui_0495 at 497.759 kb on - strand, within Dsui_0495 at 497.773 kb on - strand, within Dsui_0495 at 497.819 kb on - strand, within Dsui_0495 at 497.837 kb on + strand, within Dsui_0495 at 497.910 kb on - strand, within Dsui_0495 at 497.910 kb on - strand, within Dsui_0495 at 497.911 kb on - strand, within Dsui_0495 at 498.033 kb on - strand, within Dsui_0495 at 498.126 kb on + strand, within Dsui_0495 at 498.134 kb on - strand, within Dsui_0495 at 498.141 kb on + strand, within Dsui_0495 at 498.144 kb on - strand, within Dsui_0495 at 498.161 kb on + strand, within Dsui_0495 at 498.168 kb on - strand, within Dsui_0495 at 498.168 kb on - strand, within Dsui_0495 at 498.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 495,765 - Dsui_0492 0.89 -1.5 495,772 - Dsui_0492 0.90 -0.6 495,772 - Dsui_0492 0.90 -2.7 495,775 + +0.4 495,808 - -2.5 495,828 + -1.1 495,833 + -1.1 495,833 + -2.5 495,833 + -1.0 495,841 - +0.1 495,841 - -0.4 496,081 - Dsui_0493 0.27 -1.2 496,255 + Dsui_0493 0.46 -0.5 496,277 + Dsui_0493 0.48 +0.3 496,526 - Dsui_0493 0.76 +0.1 496,639 + Dsui_0493 0.88 +0.2 496,647 - Dsui_0493 0.89 +0.1 496,668 - -0.0 496,878 - Dsui_0494 0.17 +0.6 497,152 + Dsui_0494 0.55 +0.6 497,159 - Dsui_0494 0.56 +0.1 497,244 - Dsui_0494 0.68 -0.4 497,270 + Dsui_0494 0.71 +0.1 497,305 + Dsui_0494 0.76 +0.9 497,357 + Dsui_0494 0.83 -0.8 497,357 + Dsui_0494 0.83 +0.2 497,359 + Dsui_0494 0.84 +0.5 497,359 + Dsui_0494 0.84 +0.2 497,365 - Dsui_0494 0.85 -2.6 497,365 - Dsui_0494 0.85 -0.2 497,392 + Dsui_0494 0.88 +0.5 497,567 + -0.1 497,662 - Dsui_0495 0.19 -0.6 497,662 - Dsui_0495 0.19 -0.3 497,759 - Dsui_0495 0.30 -0.1 497,773 - Dsui_0495 0.32 -0.2 497,819 - Dsui_0495 0.37 -0.7 497,837 + Dsui_0495 0.39 +0.6 497,910 - Dsui_0495 0.47 -0.5 497,910 - Dsui_0495 0.47 -0.4 497,911 - Dsui_0495 0.47 -0.2 498,033 - Dsui_0495 0.60 +0.5 498,126 + Dsui_0495 0.70 +0.7 498,134 - Dsui_0495 0.71 -0.5 498,141 + Dsui_0495 0.72 -0.4 498,144 - Dsui_0495 0.72 -0.5 498,161 + Dsui_0495 0.74 -0.5 498,168 - Dsui_0495 0.75 -0.1 498,168 - Dsui_0495 0.75 +0.3 498,417 - -0.2
Or see this region's nucleotide sequence