Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0440 and Dsui_0441 are separated by 79 nucleotides Dsui_0441 and Dsui_0442 are separated by 159 nucleotides Dsui_0442 and Dsui_0443 are separated by 6 nucleotides
Dsui_0440: Dsui_0440 - HDOD domain-containing protein, at 447,073 to 447,930
_0440
Dsui_0441: Dsui_0441 - Mg2+ transporter MgtE, at 448,010 to 449,452
_0441
Dsui_0442: Dsui_0442 - monofunctional biosynthetic peptidoglycan transglycosylase, at 449,612 to 450,304
_0442
Dsui_0443: Dsui_0443 - shikimate 5-dehydrogenase, at 450,311 to 451,126
_0443
Position (kb) 448
449
450 Strain fitness (log2 ratio) -1
0
1 at 447.027 kb on + strand at 447.027 kb on + strand at 447.035 kb on - strand at 447.134 kb on + strand at 447.142 kb on - strand at 447.142 kb on - strand at 447.151 kb on + strand at 447.156 kb on + strand at 447.225 kb on - strand, within Dsui_0440 at 447.290 kb on - strand, within Dsui_0440 at 447.296 kb on + strand, within Dsui_0440 at 447.304 kb on - strand at 447.309 kb on - strand, within Dsui_0440 at 447.336 kb on - strand, within Dsui_0440 at 447.339 kb on + strand, within Dsui_0440 at 447.386 kb on + strand, within Dsui_0440 at 447.393 kb on - strand, within Dsui_0440 at 447.442 kb on + strand, within Dsui_0440 at 447.475 kb on + strand, within Dsui_0440 at 447.475 kb on + strand, within Dsui_0440 at 447.569 kb on + strand, within Dsui_0440 at 447.788 kb on - strand, within Dsui_0440 at 447.825 kb on + strand, within Dsui_0440 at 447.961 kb on + strand at 448.008 kb on + strand at 448.016 kb on - strand at 448.973 kb on - strand, within Dsui_0441 at 449.514 kb on + strand at 449.522 kb on - strand at 449.565 kb on - strand at 449.565 kb on - strand at 449.737 kb on + strand, within Dsui_0442 at 450.036 kb on + strand, within Dsui_0442 at 450.037 kb on - strand, within Dsui_0442 at 450.037 kb on - strand, within Dsui_0442 at 450.101 kb on - strand, within Dsui_0442 at 450.217 kb on + strand, within Dsui_0442 at 450.220 kb on - strand, within Dsui_0442 at 450.220 kb on - strand, within Dsui_0442 at 450.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 447,027 + +0.0 447,027 + -0.2 447,035 - +0.5 447,134 + +0.1 447,142 - -1.4 447,142 - -0.2 447,151 + -0.1 447,156 + -0.0 447,225 - Dsui_0440 0.18 -1.0 447,290 - Dsui_0440 0.25 -0.5 447,296 + Dsui_0440 0.26 +0.1 447,304 - +0.1 447,309 - Dsui_0440 0.28 -0.2 447,336 - Dsui_0440 0.31 +0.4 447,339 + Dsui_0440 0.31 -0.1 447,386 + Dsui_0440 0.36 -0.8 447,393 - Dsui_0440 0.37 -0.5 447,442 + Dsui_0440 0.43 -0.2 447,475 + Dsui_0440 0.47 +0.2 447,475 + Dsui_0440 0.47 -0.2 447,569 + Dsui_0440 0.58 -0.1 447,788 - Dsui_0440 0.83 -0.9 447,825 + Dsui_0440 0.88 +0.3 447,961 + +0.2 448,008 + +0.2 448,016 - -0.6 448,973 - Dsui_0441 0.67 -0.8 449,514 + +1.1 449,522 - -0.4 449,565 - +0.1 449,565 - -0.2 449,737 + Dsui_0442 0.18 -0.4 450,036 + Dsui_0442 0.61 -1.1 450,037 - Dsui_0442 0.61 +0.2 450,037 - Dsui_0442 0.61 -1.4 450,101 - Dsui_0442 0.71 +0.2 450,217 + Dsui_0442 0.87 -0.8 450,220 - Dsui_0442 0.88 +0.9 450,220 - Dsui_0442 0.88 +0.0 450,288 - +0.5
Or see this region's nucleotide sequence