Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0194 and Dsui_0195 are separated by 102 nucleotides Dsui_0195 and Dsui_0196 are separated by 73 nucleotides
Dsui_0194: Dsui_0194 - phage putative head morphogenesis protein, SPP1 gp7 family, at 193,300 to 196,020
_0194
Dsui_0195: Dsui_0195 - Caudovirus prohead protease, at 196,123 to 197,463
_0195
Dsui_0196: Dsui_0196 - hypothetical protein, at 197,537 to 199,060
_0196
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 195.204 kb on + strand, within Dsui_0194 at 195.231 kb on - strand, within Dsui_0194 at 195.263 kb on - strand, within Dsui_0194 at 195.278 kb on + strand, within Dsui_0194 at 195.337 kb on - strand, within Dsui_0194 at 195.630 kb on + strand, within Dsui_0194 at 195.630 kb on + strand at 195.638 kb on - strand, within Dsui_0194 at 195.727 kb on + strand, within Dsui_0194 at 195.838 kb on + strand at 195.857 kb on - strand at 196.075 kb on + strand at 196.163 kb on - strand at 196.184 kb on + strand at 196.192 kb on + strand at 196.205 kb on - strand at 196.208 kb on + strand at 196.470 kb on + strand, within Dsui_0195 at 196.698 kb on - strand, within Dsui_0195 at 196.712 kb on - strand, within Dsui_0195 at 196.757 kb on + strand, within Dsui_0195 at 196.775 kb on - strand, within Dsui_0195 at 196.933 kb on - strand, within Dsui_0195 at 197.133 kb on + strand, within Dsui_0195 at 197.178 kb on - strand, within Dsui_0195 at 197.189 kb on - strand, within Dsui_0195 at 197.276 kb on - strand, within Dsui_0195 at 197.302 kb on + strand, within Dsui_0195 at 197.302 kb on + strand, within Dsui_0195 at 197.315 kb on - strand, within Dsui_0195 at 197.327 kb on - strand, within Dsui_0195 at 197.380 kb on + strand at 197.405 kb on - strand at 197.541 kb on - strand at 197.590 kb on - strand at 197.660 kb on + strand at 197.685 kb on + strand at 197.688 kb on - strand at 197.759 kb on + strand, within Dsui_0196 at 197.881 kb on - strand, within Dsui_0196 at 197.889 kb on + strand, within Dsui_0196 at 197.889 kb on + strand, within Dsui_0196 at 197.926 kb on + strand, within Dsui_0196 at 197.932 kb on + strand, within Dsui_0196 at 197.935 kb on - strand, within Dsui_0196 at 197.990 kb on - strand, within Dsui_0196 at 198.032 kb on - strand, within Dsui_0196 at 198.032 kb on - strand, within Dsui_0196 at 198.071 kb on + strand, within Dsui_0196 at 198.126 kb on + strand, within Dsui_0196 at 198.160 kb on - strand, within Dsui_0196 at 198.245 kb on + strand, within Dsui_0196 at 198.273 kb on - strand, within Dsui_0196 at 198.293 kb on - strand, within Dsui_0196 at 198.333 kb on + strand, within Dsui_0196 at 198.423 kb on - strand, within Dsui_0196
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 195,204 + Dsui_0194 0.70 -0.6 195,231 - Dsui_0194 0.71 -0.5 195,263 - Dsui_0194 0.72 -1.3 195,278 + Dsui_0194 0.73 -0.5 195,337 - Dsui_0194 0.75 -1.4 195,630 + Dsui_0194 0.86 -0.5 195,630 + +0.5 195,638 - Dsui_0194 0.86 -2.8 195,727 + Dsui_0194 0.89 -0.3 195,838 + -1.9 195,857 - -1.7 196,075 + -1.2 196,163 - -1.3 196,184 + -1.3 196,192 + -0.0 196,205 - -0.9 196,208 + -0.4 196,470 + Dsui_0195 0.26 -1.4 196,698 - Dsui_0195 0.43 -1.9 196,712 - Dsui_0195 0.44 -1.0 196,757 + Dsui_0195 0.47 -1.3 196,775 - Dsui_0195 0.49 -1.5 196,933 - Dsui_0195 0.60 -0.8 197,133 + Dsui_0195 0.75 -0.9 197,178 - Dsui_0195 0.79 -3.4 197,189 - Dsui_0195 0.79 -1.4 197,276 - Dsui_0195 0.86 -0.8 197,302 + Dsui_0195 0.88 -0.9 197,302 + Dsui_0195 0.88 -2.0 197,315 - Dsui_0195 0.89 -1.1 197,327 - Dsui_0195 0.90 -0.3 197,380 + -1.3 197,405 - -0.2 197,541 - -1.1 197,590 - -0.4 197,660 + -0.9 197,685 + -2.6 197,688 - -0.1 197,759 + Dsui_0196 0.15 -0.6 197,881 - Dsui_0196 0.23 -1.8 197,889 + Dsui_0196 0.23 +0.5 197,889 + Dsui_0196 0.23 -1.5 197,926 + Dsui_0196 0.26 +0.2 197,932 + Dsui_0196 0.26 -1.8 197,935 - Dsui_0196 0.26 +0.2 197,990 - Dsui_0196 0.30 -0.8 198,032 - Dsui_0196 0.32 -0.7 198,032 - Dsui_0196 0.32 -1.0 198,071 + Dsui_0196 0.35 -1.4 198,126 + Dsui_0196 0.39 -0.2 198,160 - Dsui_0196 0.41 -1.3 198,245 + Dsui_0196 0.46 -1.1 198,273 - Dsui_0196 0.48 +0.6 198,293 - Dsui_0196 0.50 -0.9 198,333 + Dsui_0196 0.52 -2.0 198,423 - Dsui_0196 0.58 -0.9
Or see this region's nucleotide sequence