Strain Fitness in Dechlorosoma suillum PS around Dsui_0024

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0023 and Dsui_0024 are separated by 153 nucleotidesDsui_0024 and Dsui_0025 are separated by 250 nucleotides Dsui_0023: Dsui_0023 - acetylornithine/succinylornithine aminotransferase, at 20,587 to 21,777 _0023 Dsui_0024: Dsui_0024 - cytochrome c556, at 21,931 to 22,377 _0024 Dsui_0025: Dsui_0025 - hypothetical protein, at 22,628 to 23,710 _0025 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1 2 3at 20.974 kb on + strand, within Dsui_0023at 21.010 kb on - strand, within Dsui_0023at 21.079 kb on + strandat 21.181 kb on - strandat 21.186 kb on - strandat 21.221 kb on + strandat 21.227 kb on + strand, within Dsui_0023at 21.286 kb on - strand, within Dsui_0023at 21.360 kb on + strandat 21.584 kb on - strandat 21.779 kb on - strandat 21.779 kb on - strandat 21.783 kb on + strandat 21.795 kb on - strandat 21.859 kb on - strandat 21.900 kb on + strandat 22.049 kb on - strandat 22.062 kb on + strand, within Dsui_0024at 22.212 kb on + strand, within Dsui_0024at 22.212 kb on + strand, within Dsui_0024at 22.212 kb on + strand, within Dsui_0024at 22.220 kb on - strand, within Dsui_0024at 22.220 kb on - strandat 22.221 kb on - strandat 22.223 kb on + strand, within Dsui_0024at 22.364 kb on - strandat 22.390 kb on + strandat 22.410 kb on + strandat 22.468 kb on - strandat 22.655 kb on + strandat 22.751 kb on + strandat 22.789 kb on - strandat 22.825 kb on + strandat 22.882 kb on - strandat 22.992 kb on + strand, within Dsui_0025at 23.197 kb on + strandat 23.322 kb on + strand, within Dsui_0025

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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20,974 + Dsui_0023 0.32 -0.4
21,010 - Dsui_0023 0.36 -1.0
21,079 + -0.7
21,181 - -0.9
21,186 - +2.1
21,221 + -0.7
21,227 + Dsui_0023 0.54 +0.1
21,286 - Dsui_0023 0.59 -1.1
21,360 + +0.5
21,584 - +0.1
21,779 - -1.1
21,779 - +0.5
21,783 + +1.5
21,795 - -0.4
21,859 - +1.5
21,900 + -0.1
22,049 - +1.1
22,062 + Dsui_0024 0.29 -0.7
22,212 + Dsui_0024 0.63 -0.3
22,212 + Dsui_0024 0.63 -1.6
22,212 + Dsui_0024 0.63 -0.3
22,220 - Dsui_0024 0.65 -0.7
22,220 - +0.1
22,221 - +0.1
22,223 + Dsui_0024 0.65 -1.1
22,364 - +0.5
22,390 + +1.1
22,410 + -0.4
22,468 - -1.3
22,655 + +1.1
22,751 + +0.5
22,789 - -0.3
22,825 + +0.5
22,882 - +1.1
22,992 + Dsui_0025 0.34 -1.7
23,197 + +3.1
23,322 + Dsui_0025 0.64 +0.2

Or see this region's nucleotide sequence