Strain Fitness in Dechlorosoma suillum PS around Dsui_0002

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0001 and Dsui_0002 are separated by 67 nucleotidesDsui_0002 and Dsui_0003 are separated by 80 nucleotides Dsui_0001: Dsui_0001 - aminodeoxychorismate synthase, component I, at 103 to 1,923 _0001 Dsui_0002: Dsui_0002 - putative redox protein, regulator of disulfide bond formation, at 1,991 to 2,218 _0002 Dsui_0003: Dsui_0003 - putative Zn-dependent protease, at 2,299 to 3,786 _0003 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 1.018 kb on + strandat 1.056 kb on + strandat 1.360 kb on + strand, within Dsui_0001at 1.368 kb on - strand, within Dsui_0001at 1.488 kb on - strand, within Dsui_0001at 1.514 kb on + strand, within Dsui_0001at 1.613 kb on + strand, within Dsui_0001at 1.621 kb on - strand, within Dsui_0001at 1.810 kb on + strandat 1.823 kb on - strandat 1.846 kb on - strandat 1.846 kb on - strandat 1.894 kb on - strandat 2.403 kb on - strandat 2.450 kb on - strand, within Dsui_0003at 2.534 kb on - strand, within Dsui_0003at 2.548 kb on - strand, within Dsui_0003at 2.572 kb on - strand, within Dsui_0003at 2.577 kb on - strand, within Dsui_0003at 2.977 kb on - strand, within Dsui_0003at 3.026 kb on - strand, within Dsui_0003at 3.131 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,018 + +0.5
1,056 + +0.5
1,360 + Dsui_0001 0.69 +0.1
1,368 - Dsui_0001 0.69 -1.1
1,488 - Dsui_0001 0.76 +0.7
1,514 + Dsui_0001 0.77 -1.2
1,613 + Dsui_0001 0.83 -1.5
1,621 - Dsui_0001 0.83 +2.1
1,810 + -0.5
1,823 - -0.3
1,846 - +2.1
1,846 - -0.5
1,894 - -1.9
2,403 - -2.4
2,450 - Dsui_0003 0.10 -1.3
2,534 - Dsui_0003 0.16 +0.6
2,548 - Dsui_0003 0.17 -1.3
2,572 - Dsui_0003 0.18 -1.6
2,577 - Dsui_0003 0.19 -1.3
2,977 - Dsui_0003 0.46 -1.3
3,026 - Dsui_0003 0.49 -1.5
3,131 - +2.1

Or see this region's nucleotide sequence