Strain Fitness in Shewanella amazonensis SB2B around Sama_2233

Experiment: NAG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2232 and Sama_2233 are separated by 184 nucleotidesSama_2233 and Sama_2234 are separated by 136 nucleotidesSama_2234 and Sama_2235 are separated by 97 nucleotides Sama_2232: Sama_2232 - cysQ protein (RefSeq), at 2,696,411 to 2,697,256 _2232 Sama_2233: Sama_2233 - putative hydrolase (RefSeq), at 2,697,441 to 2,698,196 _2233 Sama_2234: Sama_2234 - uncharacterized lipoprotein NlpE involved in copper resistance (RefSeq), at 2,698,333 to 2,698,941 _2234 Sama_2235: Sama_2235 - NAD dependent epimerase/dehydratase family protein (RefSeq), at 2,699,039 to 2,700,043 _2235 Position (kb) 2697 2698 2699Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2696.503 kb on - strand, within Sama_2232at 2696.808 kb on + strand, within Sama_2232at 2696.809 kb on - strand, within Sama_2232at 2696.809 kb on - strand, within Sama_2232at 2696.816 kb on - strand, within Sama_2232at 2696.978 kb on - strand, within Sama_2232at 2697.043 kb on + strand, within Sama_2232at 2697.044 kb on - strand, within Sama_2232at 2697.117 kb on + strand, within Sama_2232at 2697.118 kb on - strand, within Sama_2232at 2697.128 kb on + strand, within Sama_2232at 2697.167 kb on - strand, within Sama_2232at 2697.181 kb on + strandat 2697.182 kb on - strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.204 kb on + strandat 2697.204 kb on + strandat 2697.205 kb on - strandat 2697.205 kb on - strandat 2697.205 kb on - strandat 2697.258 kb on - strandat 2697.282 kb on + strandat 2697.316 kb on - strandat 2697.316 kb on - strandat 2697.318 kb on + strandat 2697.319 kb on - strandat 2697.501 kb on + strandat 2697.513 kb on + strandat 2697.522 kb on - strand, within Sama_2233at 2697.534 kb on - strand, within Sama_2233at 2697.553 kb on + strand, within Sama_2233at 2697.784 kb on + strand, within Sama_2233at 2697.812 kb on + strand, within Sama_2233at 2697.813 kb on - strand, within Sama_2233at 2697.813 kb on - strand, within Sama_2233at 2697.817 kb on - strand, within Sama_2233at 2697.817 kb on - strand, within Sama_2233at 2697.817 kb on - strand, within Sama_2233at 2697.817 kb on - strand, within Sama_2233at 2697.817 kb on - strand, within Sama_2233at 2697.929 kb on - strand, within Sama_2233at 2698.009 kb on - strand, within Sama_2233at 2698.126 kb on + strandat 2698.126 kb on + strandat 2698.127 kb on - strandat 2698.127 kb on - strandat 2698.127 kb on - strandat 2698.139 kb on + strandat 2698.140 kb on - strandat 2698.144 kb on + strandat 2698.144 kb on + strandat 2698.144 kb on + strandat 2698.145 kb on - strandat 2698.145 kb on - strandat 2698.145 kb on - strandat 2698.145 kb on - strandat 2698.145 kb on - strandat 2698.145 kb on - strandat 2698.145 kb on - strandat 2698.145 kb on - strandat 2698.145 kb on - strandat 2698.178 kb on + strandat 2698.221 kb on + strandat 2698.230 kb on - strandat 2698.230 kb on - strandat 2698.230 kb on - strandat 2698.272 kb on + strandat 2698.272 kb on + strandat 2698.272 kb on + strandat 2698.326 kb on + strandat 2698.326 kb on + strandat 2698.326 kb on + strandat 2698.326 kb on + strandat 2698.326 kb on + strandat 2698.327 kb on - strandat 2698.327 kb on - strandat 2698.338 kb on + strandat 2698.338 kb on + strandat 2698.338 kb on + strandat 2698.338 kb on + strandat 2698.338 kb on + strandat 2698.339 kb on - strandat 2698.383 kb on + strandat 2698.383 kb on + strandat 2698.452 kb on - strand, within Sama_2234at 2698.487 kb on + strand, within Sama_2234at 2698.624 kb on + strand, within Sama_2234at 2698.624 kb on + strand, within Sama_2234at 2698.624 kb on + strand, within Sama_2234at 2698.625 kb on - strand, within Sama_2234at 2698.660 kb on - strand, within Sama_2234at 2698.696 kb on + strand, within Sama_2234at 2698.697 kb on - strand, within Sama_2234at 2698.697 kb on - strand, within Sama_2234at 2698.697 kb on - strand, within Sama_2234at 2698.697 kb on - strand, within Sama_2234at 2698.697 kb on - strand, within Sama_2234at 2698.697 kb on - strand, within Sama_2234at 2698.822 kb on + strand, within Sama_2234at 2698.829 kb on + strand, within Sama_2234at 2698.830 kb on - strand, within Sama_2234at 2698.830 kb on - strand, within Sama_2234at 2698.848 kb on + strand, within Sama_2234at 2698.874 kb on + strand, within Sama_2234at 2698.898 kb on - strandat 2698.932 kb on + strandat 2698.933 kb on - strandat 2698.933 kb on - strandat 2698.933 kb on - strandat 2698.940 kb on - strandat 2698.940 kb on - strandat 2698.946 kb on + strandat 2698.953 kb on + strandat 2698.953 kb on + strandat 2698.974 kb on - strandat 2698.974 kb on - strandat 2698.989 kb on + strandat 2698.989 kb on + strandat 2698.989 kb on + strandat 2698.990 kb on - strandat 2698.994 kb on + strandat 2698.994 kb on + strandat 2698.994 kb on + strandat 2698.994 kb on + strandat 2698.994 kb on + strandat 2698.995 kb on - strandat 2698.995 kb on - strandat 2698.995 kb on - strandat 2699.046 kb on + strandat 2699.046 kb on + strandat 2699.047 kb on - strandat 2699.047 kb on - strandat 2699.047 kb on - strandat 2699.047 kb on - strandat 2699.049 kb on + strandat 2699.049 kb on + strandat 2699.049 kb on + strandat 2699.049 kb on + strandat 2699.049 kb on + strandat 2699.049 kb on + strandat 2699.050 kb on - strandat 2699.050 kb on - strandat 2699.050 kb on - strandat 2699.050 kb on - strandat 2699.054 kb on + strandat 2699.054 kb on + strandat 2699.054 kb on + strandat 2699.055 kb on - strandat 2699.055 kb on - strandat 2699.078 kb on + strandat 2699.079 kb on - strandat 2699.090 kb on + strandat 2699.156 kb on + strand, within Sama_2235at 2699.156 kb on + strand, within Sama_2235at 2699.156 kb on + strand, within Sama_2235

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG
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2,696,503 - Sama_2232 0.11 -2.2
2,696,808 + Sama_2232 0.47 -2.2
2,696,809 - Sama_2232 0.47 -2.0
2,696,809 - Sama_2232 0.47 -2.0
2,696,816 - Sama_2232 0.48 -3.4
2,696,978 - Sama_2232 0.67 -2.5
2,697,043 + Sama_2232 0.75 -2.7
2,697,044 - Sama_2232 0.75 -4.1
2,697,117 + Sama_2232 0.83 -3.2
2,697,118 - Sama_2232 0.84 -3.8
2,697,128 + Sama_2232 0.85 -3.5
2,697,167 - Sama_2232 0.89 -2.0
2,697,181 + -3.4
2,697,182 - -3.8
2,697,202 + -2.0
2,697,202 + -2.7
2,697,202 + -1.7
2,697,202 + -1.7
2,697,202 + -2.5
2,697,202 + -3.0
2,697,203 - -0.5
2,697,203 - -1.7
2,697,203 - +0.3
2,697,203 - +0.3
2,697,203 - +0.1
2,697,203 - -0.7
2,697,203 - -1.4
2,697,203 - -1.0
2,697,204 + -4.9
2,697,204 + -2.5
2,697,205 - -2.5
2,697,205 - -0.7
2,697,205 - -0.7
2,697,258 - -1.7
2,697,282 + -0.6
2,697,316 - +1.7
2,697,316 - -0.4
2,697,318 + -0.4
2,697,319 - +0.1
2,697,501 + -0.2
2,697,513 + +0.5
2,697,522 - Sama_2233 0.11 -0.4
2,697,534 - Sama_2233 0.12 -0.1
2,697,553 + Sama_2233 0.15 +0.8
2,697,784 + Sama_2233 0.45 +0.9
2,697,812 + Sama_2233 0.49 -0.7
2,697,813 - Sama_2233 0.49 +0.3
2,697,813 - Sama_2233 0.49 -0.1
2,697,817 - Sama_2233 0.50 +0.2
2,697,817 - Sama_2233 0.50 -0.1
2,697,817 - Sama_2233 0.50 -1.5
2,697,817 - Sama_2233 0.50 +1.8
2,697,817 - Sama_2233 0.50 -0.6
2,697,929 - Sama_2233 0.65 -0.3
2,698,009 - Sama_2233 0.75 +1.1
2,698,126 + -1.1
2,698,126 + +0.5
2,698,127 - -0.1
2,698,127 - -1.0
2,698,127 - +1.8
2,698,139 + +0.1
2,698,140 - +2.7
2,698,144 + +0.1
2,698,144 + +0.3
2,698,144 + -0.1
2,698,145 - +0.7
2,698,145 - +0.8
2,698,145 - -0.4
2,698,145 - -0.2
2,698,145 - -0.1
2,698,145 - +0.3
2,698,145 - +0.9
2,698,145 - +0.0
2,698,145 - -0.1
2,698,178 + +0.1
2,698,221 + -0.6
2,698,230 - -1.7
2,698,230 - +0.7
2,698,230 - +0.3
2,698,272 + +0.1
2,698,272 + -0.8
2,698,272 + +1.1
2,698,326 + -2.3
2,698,326 + -1.4
2,698,326 + -0.3
2,698,326 + -1.3
2,698,326 + -0.3
2,698,327 - -0.3
2,698,327 - -1.7
2,698,338 + +0.3
2,698,338 + +1.9
2,698,338 + -0.3
2,698,338 + +1.3
2,698,338 + -0.9
2,698,339 - +0.3
2,698,383 + +0.2
2,698,383 + +0.3
2,698,452 - Sama_2234 0.20 -0.1
2,698,487 + Sama_2234 0.25 +0.3
2,698,624 + Sama_2234 0.48 +0.7
2,698,624 + Sama_2234 0.48 +0.5
2,698,624 + Sama_2234 0.48 +1.1
2,698,625 - Sama_2234 0.48 +1.3
2,698,660 - Sama_2234 0.54 -0.5
2,698,696 + Sama_2234 0.60 +0.3
2,698,697 - Sama_2234 0.60 +1.9
2,698,697 - Sama_2234 0.60 +1.2
2,698,697 - Sama_2234 0.60 -0.3
2,698,697 - Sama_2234 0.60 -2.3
2,698,697 - Sama_2234 0.60 -1.1
2,698,697 - Sama_2234 0.60 +0.2
2,698,822 + Sama_2234 0.80 +0.9
2,698,829 + Sama_2234 0.81 -0.3
2,698,830 - Sama_2234 0.82 +0.8
2,698,830 - Sama_2234 0.82 -0.3
2,698,848 + Sama_2234 0.85 +0.9
2,698,874 + Sama_2234 0.89 -0.3
2,698,898 - -0.7
2,698,932 + +0.7
2,698,933 - +0.7
2,698,933 - -0.5
2,698,933 - +1.1
2,698,940 - +0.6
2,698,940 - -1.0
2,698,946 + -1.3
2,698,953 + +0.8
2,698,953 + -0.7
2,698,974 - +0.0
2,698,974 - +1.3
2,698,989 + -1.7
2,698,989 + -0.0
2,698,989 + -1.7
2,698,990 - -0.1
2,698,994 + -0.5
2,698,994 + +0.2
2,698,994 + +0.7
2,698,994 + +0.5
2,698,994 + -0.3
2,698,995 - +1.3
2,698,995 - -2.0
2,698,995 - -0.6
2,699,046 + +0.1
2,699,046 + +1.9
2,699,047 - +1.3
2,699,047 - +0.3
2,699,047 - -0.1
2,699,047 - -0.5
2,699,049 + -1.3
2,699,049 + +0.3
2,699,049 + -1.7
2,699,049 + -0.4
2,699,049 + -0.4
2,699,049 + -0.5
2,699,050 - -0.1
2,699,050 - -2.5
2,699,050 - +0.3
2,699,050 - -2.1
2,699,054 + -0.3
2,699,054 + +2.5
2,699,054 + +0.2
2,699,055 - -0.7
2,699,055 - -0.9
2,699,078 + +0.2
2,699,079 - +0.3
2,699,090 + +0.0
2,699,156 + Sama_2235 0.12 +1.0
2,699,156 + Sama_2235 0.12 -2.8
2,699,156 + Sama_2235 0.12 -0.8

Or see this region's nucleotide sequence