Strain Fitness in Shewanella amazonensis SB2B around Sama_0889

Experiment: NAG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0888 and rpsP are separated by 157 nucleotidesrpsP and rimM are separated by 20 nucleotidesrimM and trmD are separated by 15 nucleotides Sama_0888: Sama_0888 - signal recognition particle protein (RefSeq), at 1,076,533 to 1,077,906 _0888 Sama_0889: rpsP - 30S ribosomal protein S16 (RefSeq), at 1,078,064 to 1,078,315 rpsP Sama_0890: rimM - 16S rRNA-processing protein RimM (RefSeq), at 1,078,336 to 1,078,866 rimM Sama_0891: trmD - tRNA (guanine-N(1)-)-methyltransferase (RefSeq), at 1,078,882 to 1,079,634 trmD Position (kb) 1078 1079Strain fitness (log2 ratio) -1 0 1at 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG
remove
1,077,870 + -0.0
1,077,870 + +0.3
1,077,870 + -0.2
1,077,870 + -0.4
1,077,870 + -0.1
1,077,870 + -0.8
1,077,870 + +0.3

Or see this region's nucleotide sequence