Experiment: NAG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0756 and Sama_0757 are separated by 542 nucleotides Sama_0757 and metH are separated by 328 nucleotides
Sama_0756: Sama_0756 - hypothetical protein (RefSeq), at 935,916 to 936,875
_0756
Sama_0757: Sama_0757 - no description, at 937,418 to 937,861
_0757
Sama_0758: metH - B12-dependent methionine synthase (RefSeq), at 938,190 to 941,930
metH
Position (kb) 937
938 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 936.434 kb on + strand, within Sama_0756 at 936.435 kb on - strand, within Sama_0756 at 936.435 kb on - strand, within Sama_0756 at 936.436 kb on + strand, within Sama_0756 at 936.445 kb on + strand, within Sama_0756 at 936.446 kb on - strand, within Sama_0756 at 936.460 kb on + strand, within Sama_0756 at 936.461 kb on - strand, within Sama_0756 at 936.490 kb on - strand, within Sama_0756 at 936.553 kb on + strand, within Sama_0756 at 936.553 kb on + strand, within Sama_0756 at 936.553 kb on + strand, within Sama_0756 at 936.554 kb on - strand, within Sama_0756 at 936.554 kb on - strand, within Sama_0756 at 936.554 kb on - strand, within Sama_0756 at 936.554 kb on - strand, within Sama_0756 at 936.585 kb on - strand, within Sama_0756 at 936.611 kb on + strand, within Sama_0756 at 936.612 kb on - strand, within Sama_0756 at 936.613 kb on + strand, within Sama_0756 at 936.655 kb on + strand, within Sama_0756 at 936.655 kb on + strand, within Sama_0756 at 936.655 kb on + strand, within Sama_0756 at 936.655 kb on + strand, within Sama_0756 at 936.655 kb on + strand, within Sama_0756 at 936.656 kb on - strand, within Sama_0756 at 936.656 kb on - strand, within Sama_0756 at 936.656 kb on - strand, within Sama_0756 at 936.656 kb on - strand, within Sama_0756 at 936.659 kb on + strand, within Sama_0756 at 936.659 kb on + strand, within Sama_0756 at 936.659 kb on + strand, within Sama_0756 at 936.659 kb on + strand, within Sama_0756 at 936.659 kb on + strand, within Sama_0756 at 936.659 kb on + strand, within Sama_0756 at 936.659 kb on + strand, within Sama_0756 at 936.659 kb on + strand, within Sama_0756 at 936.659 kb on + strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.660 kb on - strand, within Sama_0756 at 936.778 kb on + strand, within Sama_0756 at 936.779 kb on - strand, within Sama_0756 at 936.779 kb on - strand, within Sama_0756 at 936.804 kb on + strand at 936.805 kb on - strand at 936.805 kb on - strand at 936.827 kb on + strand at 936.827 kb on + strand at 936.827 kb on + strand at 936.828 kb on - strand at 936.828 kb on - strand at 936.828 kb on - strand at 936.837 kb on + strand at 936.837 kb on + strand at 936.838 kb on - strand at 936.838 kb on - strand at 936.855 kb on + strand at 936.875 kb on + strand at 936.875 kb on + strand at 936.875 kb on + strand at 936.875 kb on + strand at 936.875 kb on + strand at 936.875 kb on + strand at 936.876 kb on - strand at 936.876 kb on - strand at 936.876 kb on - strand at 936.876 kb on - strand at 936.876 kb on - strand at 936.876 kb on - strand at 936.876 kb on - strand at 936.876 kb on - strand at 936.876 kb on - strand at 936.891 kb on - strand at 936.893 kb on + strand at 936.893 kb on + strand at 936.894 kb on - strand at 936.894 kb on - strand at 936.921 kb on + strand at 936.922 kb on - strand at 936.922 kb on - strand at 936.947 kb on + strand at 936.947 kb on + strand at 936.948 kb on - strand at 936.972 kb on + strand at 936.972 kb on + strand at 937.003 kb on + strand at 937.007 kb on + strand at 937.008 kb on - strand at 937.008 kb on - strand at 937.016 kb on + strand at 937.016 kb on + strand at 937.016 kb on + strand at 937.016 kb on + strand at 937.017 kb on - strand at 937.017 kb on - strand at 937.017 kb on - strand at 937.017 kb on - strand at 937.017 kb on - strand at 937.030 kb on + strand at 937.030 kb on + strand at 937.031 kb on - strand at 937.031 kb on - strand at 937.031 kb on - strand at 937.031 kb on - strand at 937.037 kb on - strand at 937.037 kb on - strand at 937.052 kb on + strand at 937.117 kb on + strand at 937.118 kb on - strand at 937.118 kb on - strand at 937.118 kb on - strand at 937.188 kb on - strand at 937.268 kb on + strand at 937.268 kb on + strand at 937.268 kb on + strand at 937.268 kb on + strand at 937.268 kb on + strand at 937.269 kb on - strand at 937.269 kb on - strand at 937.269 kb on - strand at 937.269 kb on - strand at 937.269 kb on - strand at 937.275 kb on + strand at 937.275 kb on + strand at 937.275 kb on + strand at 937.275 kb on + strand at 937.276 kb on - strand at 937.276 kb on - strand at 937.276 kb on - strand at 937.276 kb on - strand at 937.298 kb on - strand at 937.301 kb on + strand at 937.301 kb on + strand at 937.301 kb on + strand at 937.301 kb on + strand at 937.301 kb on + strand at 937.302 kb on - strand at 937.302 kb on - strand at 937.302 kb on - strand at 937.302 kb on - strand at 937.355 kb on + strand at 937.355 kb on + strand at 937.356 kb on - strand at 937.377 kb on + strand at 937.389 kb on + strand at 937.390 kb on - strand at 937.397 kb on + strand at 937.397 kb on + strand at 937.397 kb on + strand at 937.397 kb on + strand at 937.398 kb on - strand at 937.398 kb on - strand at 937.532 kb on + strand, within Sama_0757 at 937.532 kb on + strand, within Sama_0757 at 937.532 kb on + strand, within Sama_0757 at 937.532 kb on + strand, within Sama_0757 at 937.533 kb on - strand, within Sama_0757 at 937.533 kb on - strand, within Sama_0757 at 937.550 kb on + strand, within Sama_0757 at 937.646 kb on + strand, within Sama_0757 at 937.646 kb on + strand, within Sama_0757 at 937.646 kb on + strand, within Sama_0757 at 937.646 kb on + strand, within Sama_0757 at 937.647 kb on - strand, within Sama_0757 at 937.647 kb on - strand, within Sama_0757 at 937.647 kb on - strand, within Sama_0757 at 937.647 kb on - strand, within Sama_0757 at 937.742 kb on + strand, within Sama_0757 at 937.742 kb on + strand, within Sama_0757 at 937.742 kb on + strand, within Sama_0757 at 937.743 kb on - strand, within Sama_0757 at 937.743 kb on - strand, within Sama_0757 at 937.791 kb on + strand, within Sama_0757 at 937.791 kb on + strand, within Sama_0757 at 937.792 kb on - strand, within Sama_0757 at 937.792 kb on - strand, within Sama_0757 at 937.825 kb on + strand at 937.825 kb on + strand at 937.826 kb on - strand at 937.826 kb on - strand at 937.826 kb on - strand at 937.826 kb on - strand at 937.839 kb on + strand at 937.839 kb on + strand at 937.840 kb on - strand at 937.840 kb on - strand at 937.844 kb on + strand at 937.844 kb on + strand at 937.845 kb on - strand at 937.845 kb on - strand at 937.845 kb on - strand at 937.871 kb on + strand at 937.872 kb on - strand at 937.872 kb on - strand at 937.872 kb on - strand at 937.886 kb on + strand at 937.886 kb on + strand at 937.886 kb on + strand at 937.887 kb on - strand at 937.893 kb on + strand at 937.893 kb on + strand at 937.893 kb on + strand at 937.893 kb on + strand at 937.894 kb on - strand at 937.894 kb on - strand at 937.894 kb on - strand at 937.894 kb on - strand at 937.913 kb on + strand at 937.913 kb on + strand at 937.915 kb on + strand at 937.915 kb on + strand at 937.915 kb on + strand at 937.915 kb on + strand at 937.915 kb on + strand at 937.916 kb on - strand at 937.916 kb on - strand at 937.931 kb on + strand at 937.931 kb on + strand at 937.932 kb on - strand at 937.936 kb on + strand at 937.936 kb on + strand at 937.937 kb on - strand at 937.937 kb on - strand at 937.954 kb on - strand at 937.992 kb on + strand at 937.993 kb on - strand at 937.993 kb on - strand at 938.085 kb on + strand at 938.086 kb on - strand at 938.092 kb on + strand at 938.092 kb on + strand at 938.092 kb on + strand at 938.093 kb on - strand at 938.093 kb on - strand at 938.093 kb on - strand at 938.102 kb on + strand at 938.103 kb on - strand at 938.103 kb on - strand at 938.108 kb on - strand at 938.176 kb on - strand at 938.176 kb on - strand at 938.192 kb on - strand at 938.192 kb on - strand at 938.192 kb on - strand at 938.203 kb on + strand at 938.204 kb on - strand at 938.204 kb on - strand at 938.255 kb on + strand at 938.256 kb on - strand at 938.267 kb on - strand at 938.267 kb on - strand at 938.291 kb on + strand at 938.291 kb on + strand at 938.291 kb on + strand at 938.294 kb on + strand at 938.294 kb on + strand at 938.294 kb on + strand at 938.294 kb on + strand at 938.309 kb on - strand at 938.309 kb on - strand at 938.309 kb on - strand at 938.332 kb on + strand at 938.359 kb on + strand at 938.360 kb on - strand at 938.360 kb on - strand at 938.360 kb on - strand at 938.381 kb on + strand at 938.382 kb on - strand at 938.384 kb on + strand at 938.384 kb on + strand at 938.384 kb on + strand at 938.384 kb on + strand at 938.384 kb on + strand at 938.385 kb on - strand at 938.385 kb on - strand at 938.385 kb on - strand at 938.385 kb on - strand at 938.385 kb on - strand at 938.385 kb on - strand at 938.549 kb on + strand at 938.550 kb on - strand at 938.550 kb on - strand at 938.604 kb on + strand, within metH at 938.626 kb on + strand, within metH at 938.626 kb on + strand, within metH at 938.704 kb on + strand, within metH at 938.756 kb on + strand, within metH at 938.756 kb on + strand, within metH at 938.757 kb on - strand, within metH at 938.808 kb on + strand, within metH at 938.809 kb on - strand, within metH at 938.833 kb on + strand, within metH at 938.833 kb on + strand, within metH at 938.833 kb on + strand, within metH at 938.834 kb on - strand, within metH at 938.834 kb on - strand, within metH at 938.834 kb on - strand, within metH at 938.843 kb on + strand, within metH at 938.856 kb on + strand, within metH at 938.856 kb on + strand, within metH
Per-strain Table
Position Strand Gene LocusTag Fraction NAG remove 936,434 + Sama_0756 0.54 +0.7 936,435 - Sama_0756 0.54 +0.4 936,435 - Sama_0756 0.54 -1.3 936,436 + Sama_0756 0.54 -1.9 936,445 + Sama_0756 0.55 +0.7 936,446 - Sama_0756 0.55 -1.3 936,460 + Sama_0756 0.57 +0.2 936,461 - Sama_0756 0.57 -0.4 936,490 - Sama_0756 0.60 +0.0 936,553 + Sama_0756 0.66 -1.1 936,553 + Sama_0756 0.66 +1.1 936,553 + Sama_0756 0.66 +1.0 936,554 - Sama_0756 0.66 +0.8 936,554 - Sama_0756 0.66 +0.0 936,554 - Sama_0756 0.66 -0.5 936,554 - Sama_0756 0.66 +0.8 936,585 - Sama_0756 0.70 -0.8 936,611 + Sama_0756 0.72 +0.9 936,612 - Sama_0756 0.72 -0.1 936,613 + Sama_0756 0.73 +0.7 936,655 + Sama_0756 0.77 -1.1 936,655 + Sama_0756 0.77 -0.5 936,655 + Sama_0756 0.77 -0.9 936,655 + Sama_0756 0.77 -0.1 936,655 + Sama_0756 0.77 -0.9 936,656 - Sama_0756 0.77 -0.8 936,656 - Sama_0756 0.77 -0.9 936,656 - Sama_0756 0.77 +0.1 936,656 - Sama_0756 0.77 +1.4 936,659 + Sama_0756 0.77 +1.1 936,659 + Sama_0756 0.77 -0.1 936,659 + Sama_0756 0.77 +1.0 936,659 + Sama_0756 0.77 -0.7 936,659 + Sama_0756 0.77 +0.8 936,659 + Sama_0756 0.77 -0.2 936,659 + Sama_0756 0.77 +0.3 936,659 + Sama_0756 0.77 +0.2 936,659 + Sama_0756 0.77 -0.0 936,660 - Sama_0756 0.78 -0.3 936,660 - Sama_0756 0.78 +0.8 936,660 - Sama_0756 0.78 +0.9 936,660 - Sama_0756 0.78 +2.2 936,660 - Sama_0756 0.78 +0.9 936,660 - Sama_0756 0.78 +1.4 936,660 - Sama_0756 0.78 +0.5 936,660 - Sama_0756 0.78 +0.3 936,660 - Sama_0756 0.78 +0.5 936,660 - Sama_0756 0.78 -1.3 936,660 - Sama_0756 0.78 +0.7 936,660 - Sama_0756 0.78 +0.6 936,778 + Sama_0756 0.90 -0.5 936,779 - Sama_0756 0.90 -0.3 936,779 - Sama_0756 0.90 +0.5 936,804 + +0.1 936,805 - +0.7 936,805 - -0.3 936,827 + -0.9 936,827 + -0.5 936,827 + -0.5 936,828 - +0.3 936,828 - -1.8 936,828 - +0.8 936,837 + -1.0 936,837 + +0.5 936,838 - +1.0 936,838 - -0.3 936,855 + +0.7 936,875 + -1.3 936,875 + +0.0 936,875 + +0.0 936,875 + +1.7 936,875 + +0.2 936,875 + +1.2 936,876 - +0.4 936,876 - -0.8 936,876 - -0.2 936,876 - +1.1 936,876 - +1.2 936,876 - +0.9 936,876 - -0.3 936,876 - +0.5 936,876 - +1.4 936,891 - -0.1 936,893 + +0.3 936,893 + -0.2 936,894 - +0.4 936,894 - +0.7 936,921 + -0.0 936,922 - -0.3 936,922 - +0.7 936,947 + +0.1 936,947 + -0.1 936,948 - +1.0 936,972 + +0.2 936,972 + -0.4 937,003 + +0.2 937,007 + -0.1 937,008 - +1.5 937,008 - -0.8 937,016 + -0.3 937,016 + -0.3 937,016 + +0.4 937,016 + -1.7 937,017 - +0.7 937,017 - -2.8 937,017 - +0.5 937,017 - +0.7 937,017 - -1.0 937,030 + +0.8 937,030 + -1.3 937,031 - +0.7 937,031 - -0.2 937,031 - +0.2 937,031 - +0.3 937,037 - -0.2 937,037 - +0.2 937,052 + -1.5 937,117 + +0.3 937,118 - +0.4 937,118 - -0.2 937,118 - +0.7 937,188 - +1.0 937,268 + -1.8 937,268 + -0.1 937,268 + +0.5 937,268 + +1.9 937,268 + -0.2 937,269 - -0.1 937,269 - -0.1 937,269 - +0.7 937,269 - -0.3 937,269 - +0.2 937,275 + +1.5 937,275 + +1.2 937,275 + -0.1 937,275 + -1.1 937,276 - +0.9 937,276 - -0.1 937,276 - +0.9 937,276 - +0.5 937,298 - +0.7 937,301 + +1.0 937,301 + -1.8 937,301 + +0.2 937,301 + -0.3 937,301 + +0.5 937,302 - +0.1 937,302 - -0.6 937,302 - +0.8 937,302 - +0.5 937,355 + +0.5 937,355 + -0.4 937,356 - +0.1 937,377 + -0.5 937,389 + -0.6 937,390 - -0.1 937,397 + +0.3 937,397 + +0.9 937,397 + -0.3 937,397 + +0.1 937,398 - +0.5 937,398 - +0.8 937,532 + Sama_0757 0.26 +1.7 937,532 + Sama_0757 0.26 +0.2 937,532 + Sama_0757 0.26 -0.9 937,532 + Sama_0757 0.26 -0.1 937,533 - Sama_0757 0.26 +1.0 937,533 - Sama_0757 0.26 -0.4 937,550 + Sama_0757 0.30 -2.2 937,646 + Sama_0757 0.51 -0.6 937,646 + Sama_0757 0.51 -0.2 937,646 + Sama_0757 0.51 +0.5 937,646 + Sama_0757 0.51 -0.2 937,647 - Sama_0757 0.52 +0.1 937,647 - Sama_0757 0.52 -0.8 937,647 - Sama_0757 0.52 +0.4 937,647 - Sama_0757 0.52 -0.5 937,742 + Sama_0757 0.73 +1.6 937,742 + Sama_0757 0.73 +0.5 937,742 + Sama_0757 0.73 +2.2 937,743 - Sama_0757 0.73 +1.1 937,743 - Sama_0757 0.73 -1.3 937,791 + Sama_0757 0.84 +0.7 937,791 + Sama_0757 0.84 +2.0 937,792 - Sama_0757 0.84 +0.4 937,792 - Sama_0757 0.84 +0.1 937,825 + -1.2 937,825 + -2.7 937,826 - -0.2 937,826 - -0.1 937,826 - +0.9 937,826 - -1.9 937,839 + -0.2 937,839 + -3.0 937,840 - +0.4 937,840 - -1.4 937,844 + -2.0 937,844 + +0.8 937,845 - -1.3 937,845 - -1.2 937,845 - -0.1 937,871 + -1.9 937,872 - +0.1 937,872 - +0.2 937,872 - -0.6 937,886 + -2.1 937,886 + -1.0 937,886 + +0.9 937,887 - -0.1 937,893 + +0.6 937,893 + -0.2 937,893 + +0.7 937,893 + -0.1 937,894 - -0.4 937,894 - +0.1 937,894 - -0.3 937,894 - -0.3 937,913 + -1.3 937,913 + -0.3 937,915 + +1.0 937,915 + -0.7 937,915 + +0.5 937,915 + +0.4 937,915 + -0.5 937,916 - +0.7 937,916 - -0.8 937,931 + +0.2 937,931 + -0.3 937,932 - +1.0 937,936 + -0.0 937,936 + -1.9 937,937 - +0.5 937,937 - -0.0 937,954 - -0.8 937,992 + +0.7 937,993 - -0.3 937,993 - +0.7 938,085 + +0.2 938,086 - -2.3 938,092 + +0.3 938,092 + -0.3 938,092 + -1.8 938,093 - +0.2 938,093 - +0.0 938,093 - -0.8 938,102 + -1.2 938,103 - -0.9 938,103 - +1.1 938,108 - +1.3 938,176 - -0.2 938,176 - -0.8 938,192 - +0.1 938,192 - +0.0 938,192 - -0.0 938,203 + -2.2 938,204 - -2.6 938,204 - -5.1 938,255 + -2.1 938,256 - -2.1 938,267 - -4.8 938,267 - -3.9 938,291 + -1.8 938,291 + -2.8 938,291 + -3.5 938,294 + -1.7 938,294 + -4.4 938,294 + -2.1 938,294 + -2.1 938,309 - -4.0 938,309 - -2.3 938,309 - -2.1 938,332 + -1.9 938,359 + -2.3 938,360 - -3.8 938,360 - -0.9 938,360 - -0.9 938,381 + -3.7 938,382 - -3.8 938,384 + -4.2 938,384 + -3.1 938,384 + -3.3 938,384 + -1.0 938,384 + -3.3 938,385 - -2.3 938,385 - -0.9 938,385 - -1.9 938,385 - -3.5 938,385 - -3.1 938,385 - -0.9 938,549 + -4.7 938,550 - -3.1 938,550 - -4.3 938,604 + metH Sama_0758 0.11 -5.3 938,626 + metH Sama_0758 0.12 -1.9 938,626 + metH Sama_0758 0.12 -4.2 938,704 + metH Sama_0758 0.14 -3.6 938,756 + metH Sama_0758 0.15 -4.7 938,756 + metH Sama_0758 0.15 -3.3 938,757 - metH Sama_0758 0.15 -3.4 938,808 + metH Sama_0758 0.17 -1.7 938,809 - metH Sama_0758 0.17 -1.9 938,833 + metH Sama_0758 0.17 -2.1 938,833 + metH Sama_0758 0.17 -3.7 938,833 + metH Sama_0758 0.17 -2.1 938,834 - metH Sama_0758 0.17 -3.4 938,834 - metH Sama_0758 0.17 -4.5 938,834 - metH Sama_0758 0.17 -4.7 938,843 + metH Sama_0758 0.17 -1.7 938,856 + metH Sama_0758 0.18 -2.8 938,856 + metH Sama_0758 0.18 -1.9
Or see this region's nucleotide sequence