Strain Fitness in Shewanella oneidensis MR-1 around SO2492

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpykA and SO2492 are separated by 397 nucleotidesSO2492 and SO2493 are separated by 12 nucleotidesSO2493 and SO2494 are separated by 140 nucleotides SO2491: pykA - pyruvate kinase II (NCBI ptt file), at 2,613,936 to 2,615,375 pykA SO2492: SO2492 - acyl-CoA dehydrogenase (1.3.8.-) (from data), at 2,615,773 to 2,618,052 SO2492 SO2493: SO2493 - transcriptional regulator, TetR family (NCBI ptt file), at 2,618,065 to 2,618,784 SO2493 SO2494: SO2494 - zinc-dependent metallopeptidase (NCBI ptt file), at 2,618,925 to 2,620,784 SO2494 Position (kb) 2615 2616 2617 2618 2619Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2615.189 kb on - strand, within pykAat 2615.309 kb on + strandat 2615.944 kb on - strandat 2615.991 kb on - strandat 2616.037 kb on - strand, within SO2492at 2616.041 kb on + strand, within SO2492at 2616.063 kb on - strand, within SO2492at 2616.310 kb on - strand, within SO2492at 2616.316 kb on - strand, within SO2492at 2616.407 kb on - strand, within SO2492at 2616.510 kb on - strand, within SO2492at 2616.687 kb on + strand, within SO2492at 2616.787 kb on + strand, within SO2492at 2616.795 kb on - strand, within SO2492at 2616.795 kb on - strand, within SO2492at 2616.840 kb on + strand, within SO2492at 2616.901 kb on - strand, within SO2492at 2616.925 kb on + strand, within SO2492at 2616.981 kb on + strand, within SO2492at 2617.115 kb on - strand, within SO2492at 2617.153 kb on + strand, within SO2492at 2617.166 kb on - strand, within SO2492at 2617.232 kb on - strand, within SO2492at 2617.317 kb on - strand, within SO2492at 2617.562 kb on - strand, within SO2492at 2617.781 kb on - strand, within SO2492at 2617.781 kb on - strand, within SO2492at 2617.786 kb on - strand, within SO2492at 2617.979 kb on - strandat 2618.146 kb on - strand, within SO2493at 2618.202 kb on + strand, within SO2493at 2618.217 kb on + strand, within SO2493at 2618.482 kb on - strand, within SO2493at 2618.484 kb on - strand, within SO2493at 2618.517 kb on + strand, within SO2493at 2618.525 kb on - strand, within SO2493at 2618.530 kb on + strand, within SO2493at 2618.530 kb on + strand, within SO2493at 2618.538 kb on - strand, within SO2493at 2618.538 kb on - strand, within SO2493at 2618.596 kb on - strand, within SO2493at 2618.603 kb on - strand, within SO2493at 2618.606 kb on - strand, within SO2493at 2618.674 kb on - strand, within SO2493at 2618.674 kb on - strand, within SO2493at 2618.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,615,189 - pykA SO2491 0.87 +0.8
2,615,309 + -0.3
2,615,944 - -4.5
2,615,991 - -4.3
2,616,037 - SO2492 0.12 -5.0
2,616,041 + SO2492 0.12 -4.5
2,616,063 - SO2492 0.13 -4.1
2,616,310 - SO2492 0.24 -1.1
2,616,316 - SO2492 0.24 -3.6
2,616,407 - SO2492 0.28 -4.4
2,616,510 - SO2492 0.32 -1.8
2,616,687 + SO2492 0.40 -3.9
2,616,787 + SO2492 0.44 -4.0
2,616,795 - SO2492 0.45 -2.3
2,616,795 - SO2492 0.45 -3.4
2,616,840 + SO2492 0.47 -5.0
2,616,901 - SO2492 0.49 -4.4
2,616,925 + SO2492 0.51 -4.0
2,616,981 + SO2492 0.53 -3.7
2,617,115 - SO2492 0.59 -5.0
2,617,153 + SO2492 0.61 -3.5
2,617,166 - SO2492 0.61 -4.5
2,617,232 - SO2492 0.64 -2.8
2,617,317 - SO2492 0.68 -4.3
2,617,562 - SO2492 0.78 -2.1
2,617,781 - SO2492 0.88 -4.3
2,617,781 - SO2492 0.88 -4.2
2,617,786 - SO2492 0.88 -3.4
2,617,979 - -2.5
2,618,146 - SO2493 0.11 -1.0
2,618,202 + SO2493 0.19 -1.6
2,618,217 + SO2493 0.21 -3.2
2,618,482 - SO2493 0.58 -2.5
2,618,484 - SO2493 0.58 -1.5
2,618,517 + SO2493 0.63 -1.5
2,618,525 - SO2493 0.64 -3.8
2,618,530 + SO2493 0.65 -2.3
2,618,530 + SO2493 0.65 -2.9
2,618,538 - SO2493 0.66 -1.8
2,618,538 - SO2493 0.66 -1.7
2,618,596 - SO2493 0.74 -1.7
2,618,603 - SO2493 0.75 -3.0
2,618,606 - SO2493 0.75 -4.0
2,618,674 - SO2493 0.85 -2.2
2,618,674 - SO2493 0.85 -1.8
2,618,808 + +0.6

Or see this region's nucleotide sequence