Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpdA and SO0427 are separated by 138 nucleotides SO0427 and SO0428 are separated by 230 nucleotides
SO0426: lpdA - pyruvate dehydrogenase complex, E3 component, lipoamide dehydrogenase (NCBI ptt file), at 443,262 to 444,689
lpdA
SO0427: SO0427 - sensory box protein (NCBI ptt file), at 444,828 to 449,303
SO0427
SO0428: SO0428 - conserved hypothetical protein (NCBI ptt file), at 449,534 to 451,744
SO0428
Position (kb) 444
445
446
447
448
449
450 Strain fitness (log2 ratio) -2
-1
0
1
2 at 444.784 kb on + strand at 444.803 kb on + strand at 444.882 kb on + strand at 444.887 kb on + strand at 444.887 kb on + strand at 444.890 kb on - strand at 444.895 kb on - strand at 444.895 kb on - strand at 444.963 kb on - strand at 444.963 kb on - strand at 444.972 kb on + strand at 445.019 kb on - strand at 445.030 kb on + strand at 445.038 kb on - strand at 445.065 kb on + strand at 445.066 kb on + strand at 445.073 kb on - strand at 445.074 kb on - strand at 445.239 kb on - strand at 445.308 kb on + strand, within SO0427 at 445.308 kb on + strand, within SO0427 at 445.314 kb on + strand, within SO0427 at 445.314 kb on + strand, within SO0427 at 445.322 kb on - strand, within SO0427 at 445.322 kb on - strand, within SO0427 at 445.323 kb on - strand, within SO0427 at 445.323 kb on - strand, within SO0427 at 445.386 kb on + strand, within SO0427 at 445.386 kb on + strand, within SO0427 at 445.509 kb on - strand, within SO0427 at 445.539 kb on - strand, within SO0427 at 445.656 kb on - strand, within SO0427 at 445.675 kb on + strand, within SO0427 at 445.714 kb on - strand, within SO0427 at 445.721 kb on - strand, within SO0427 at 445.732 kb on + strand, within SO0427 at 445.817 kb on + strand, within SO0427 at 445.904 kb on - strand, within SO0427 at 445.925 kb on + strand, within SO0427 at 445.931 kb on - strand, within SO0427 at 445.931 kb on - strand, within SO0427 at 445.986 kb on - strand, within SO0427 at 445.989 kb on + strand, within SO0427 at 446.029 kb on + strand, within SO0427 at 446.092 kb on + strand, within SO0427 at 446.100 kb on - strand, within SO0427 at 446.109 kb on + strand, within SO0427 at 446.141 kb on + strand, within SO0427 at 446.187 kb on + strand, within SO0427 at 446.349 kb on + strand, within SO0427 at 446.400 kb on - strand, within SO0427 at 446.413 kb on + strand, within SO0427 at 446.421 kb on - strand, within SO0427 at 446.457 kb on + strand, within SO0427 at 446.500 kb on + strand, within SO0427 at 446.700 kb on + strand, within SO0427 at 446.858 kb on - strand, within SO0427 at 446.881 kb on - strand, within SO0427 at 446.971 kb on - strand, within SO0427 at 447.011 kb on + strand, within SO0427 at 447.024 kb on + strand, within SO0427 at 447.031 kb on - strand, within SO0427 at 447.062 kb on - strand, within SO0427 at 447.084 kb on + strand, within SO0427 at 447.084 kb on + strand, within SO0427 at 447.182 kb on + strand, within SO0427 at 447.182 kb on + strand, within SO0427 at 447.182 kb on + strand, within SO0427 at 447.190 kb on - strand, within SO0427 at 447.190 kb on - strand, within SO0427 at 447.190 kb on - strand, within SO0427 at 447.225 kb on - strand, within SO0427 at 447.310 kb on + strand, within SO0427 at 447.318 kb on - strand, within SO0427 at 447.375 kb on + strand, within SO0427 at 447.390 kb on - strand, within SO0427 at 447.398 kb on + strand, within SO0427 at 447.489 kb on + strand, within SO0427 at 447.500 kb on + strand, within SO0427 at 447.514 kb on + strand, within SO0427 at 447.714 kb on + strand, within SO0427 at 447.717 kb on - strand, within SO0427 at 447.735 kb on + strand, within SO0427 at 447.735 kb on + strand, within SO0427 at 447.743 kb on - strand, within SO0427 at 447.804 kb on - strand, within SO0427 at 447.837 kb on - strand, within SO0427 at 447.840 kb on + strand, within SO0427 at 447.872 kb on + strand, within SO0427 at 447.886 kb on + strand, within SO0427 at 447.886 kb on + strand, within SO0427 at 447.886 kb on + strand, within SO0427 at 447.894 kb on - strand, within SO0427 at 448.015 kb on - strand, within SO0427 at 448.128 kb on + strand, within SO0427 at 448.153 kb on + strand, within SO0427 at 448.167 kb on + strand, within SO0427 at 448.215 kb on + strand, within SO0427 at 448.327 kb on + strand, within SO0427 at 448.335 kb on - strand, within SO0427 at 448.366 kb on + strand, within SO0427 at 448.374 kb on - strand, within SO0427 at 448.460 kb on - strand, within SO0427 at 448.497 kb on + strand, within SO0427 at 448.503 kb on + strand, within SO0427 at 448.503 kb on + strand, within SO0427 at 448.504 kb on + strand, within SO0427 at 448.505 kb on - strand, within SO0427 at 448.511 kb on - strand, within SO0427 at 448.511 kb on - strand, within SO0427 at 448.511 kb on - strand, within SO0427 at 448.566 kb on - strand, within SO0427 at 448.631 kb on - strand, within SO0427 at 448.691 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.727 kb on + strand, within SO0427 at 448.733 kb on + strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.735 kb on + strand, within SO0427 at 448.740 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.751 kb on + strand, within SO0427 at 448.758 kb on - strand, within SO0427 at 448.758 kb on - strand, within SO0427 at 448.771 kb on + strand, within SO0427 at 448.807 kb on - strand, within SO0427 at 448.932 kb on + strand at 448.950 kb on - strand at 448.953 kb on + strand at 448.961 kb on - strand at 448.998 kb on + strand at 448.998 kb on + strand at 448.998 kb on + strand at 449.000 kb on + strand at 449.008 kb on - strand at 449.084 kb on - strand at 449.086 kb on + strand at 449.086 kb on + strand at 449.091 kb on + strand at 449.091 kb on + strand at 449.091 kb on + strand at 449.094 kb on - strand at 449.099 kb on - strand at 449.099 kb on - strand at 449.099 kb on - strand at 449.100 kb on + strand at 449.110 kb on + strand at 449.110 kb on + strand at 449.110 kb on + strand at 449.110 kb on + strand at 449.113 kb on + strand at 449.118 kb on - strand at 449.118 kb on - strand at 449.139 kb on - strand at 449.159 kb on + strand at 449.159 kb on + strand at 449.167 kb on + strand at 449.167 kb on - strand at 449.167 kb on - strand at 449.167 kb on - strand at 449.167 kb on - strand at 449.169 kb on + strand at 449.169 kb on + strand at 449.175 kb on - strand at 449.184 kb on - strand at 449.184 kb on - strand at 449.197 kb on - strand at 449.203 kb on + strand at 449.209 kb on - strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.241 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.263 kb on + strand at 449.284 kb on - strand at 449.319 kb on + strand at 449.324 kb on + strand at 449.327 kb on - strand at 449.328 kb on - strand at 449.344 kb on + strand at 449.352 kb on - strand at 449.352 kb on - strand at 449.358 kb on + strand at 449.373 kb on - strand at 449.434 kb on + strand at 449.469 kb on + strand at 449.469 kb on + strand at 449.477 kb on - strand at 449.567 kb on + strand at 449.575 kb on - strand at 449.607 kb on - strand at 449.615 kb on + strand at 449.623 kb on - strand at 449.632 kb on + strand at 449.640 kb on - strand at 449.640 kb on - strand at 449.645 kb on + strand at 449.667 kb on - strand at 449.678 kb on + strand at 449.747 kb on + strand at 449.789 kb on + strand, within SO0428 at 449.841 kb on - strand, within SO0428 at 449.970 kb on + strand, within SO0428 at 450.078 kb on + strand, within SO0428 at 450.108 kb on + strand, within SO0428 at 450.137 kb on + strand, within SO0428 at 450.191 kb on + strand, within SO0428 at 450.201 kb on - strand, within SO0428 at 450.255 kb on - strand, within SO0428
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 444,784 + -0.3 444,803 + +0.3 444,882 + +0.8 444,887 + -0.1 444,887 + -0.4 444,890 - +0.7 444,895 - -0.4 444,895 - -0.3 444,963 - +0.4 444,963 - +0.1 444,972 + +0.0 445,019 - +0.4 445,030 + -0.1 445,038 - -0.1 445,065 + +0.0 445,066 + -0.6 445,073 - +0.8 445,074 - +0.1 445,239 - +0.7 445,308 + SO0427 0.11 +0.5 445,308 + SO0427 0.11 +0.4 445,314 + SO0427 0.11 +0.6 445,314 + SO0427 0.11 +0.8 445,322 - SO0427 0.11 -0.3 445,322 - SO0427 0.11 +0.7 445,323 - SO0427 0.11 +0.6 445,323 - SO0427 0.11 -0.1 445,386 + SO0427 0.12 +0.5 445,386 + SO0427 0.12 +0.5 445,509 - SO0427 0.15 +0.3 445,539 - SO0427 0.16 +0.0 445,656 - SO0427 0.18 +0.2 445,675 + SO0427 0.19 +0.2 445,714 - SO0427 0.20 +1.0 445,721 - SO0427 0.20 +0.0 445,732 + SO0427 0.20 +0.3 445,817 + SO0427 0.22 +0.7 445,904 - SO0427 0.24 +0.4 445,925 + SO0427 0.25 +0.0 445,931 - SO0427 0.25 +1.0 445,931 - SO0427 0.25 -0.0 445,986 - SO0427 0.26 +0.3 445,989 + SO0427 0.26 +0.2 446,029 + SO0427 0.27 +0.5 446,092 + SO0427 0.28 +0.2 446,100 - SO0427 0.28 +0.2 446,109 + SO0427 0.29 -0.3 446,141 + SO0427 0.29 +0.0 446,187 + SO0427 0.30 +0.2 446,349 + SO0427 0.34 +0.5 446,400 - SO0427 0.35 +0.0 446,413 + SO0427 0.35 +1.3 446,421 - SO0427 0.36 +0.7 446,457 + SO0427 0.36 +0.3 446,500 + SO0427 0.37 -0.4 446,700 + SO0427 0.42 +1.7 446,858 - SO0427 0.45 +0.1 446,881 - SO0427 0.46 +0.3 446,971 - SO0427 0.48 +2.0 447,011 + SO0427 0.49 +0.5 447,024 + SO0427 0.49 +0.2 447,031 - SO0427 0.49 -0.2 447,062 - SO0427 0.50 +0.1 447,084 + SO0427 0.50 +0.7 447,084 + SO0427 0.50 +0.4 447,182 + SO0427 0.53 +0.9 447,182 + SO0427 0.53 -0.1 447,182 + SO0427 0.53 -0.3 447,190 - SO0427 0.53 +0.2 447,190 - SO0427 0.53 +0.2 447,190 - SO0427 0.53 -0.1 447,225 - SO0427 0.54 -0.4 447,310 + SO0427 0.55 -0.3 447,318 - SO0427 0.56 -0.1 447,375 + SO0427 0.57 -1.3 447,390 - SO0427 0.57 +0.5 447,398 + SO0427 0.57 +0.7 447,489 + SO0427 0.59 -0.0 447,500 + SO0427 0.60 +0.9 447,514 + SO0427 0.60 +0.5 447,714 + SO0427 0.64 +0.1 447,717 - SO0427 0.65 +0.6 447,735 + SO0427 0.65 +0.3 447,735 + SO0427 0.65 +0.3 447,743 - SO0427 0.65 -0.2 447,804 - SO0427 0.66 +0.9 447,837 - SO0427 0.67 +0.7 447,840 + SO0427 0.67 +0.4 447,872 + SO0427 0.68 -0.5 447,886 + SO0427 0.68 +0.7 447,886 + SO0427 0.68 +0.7 447,886 + SO0427 0.68 +0.7 447,894 - SO0427 0.68 +0.3 448,015 - SO0427 0.71 +0.5 448,128 + SO0427 0.74 +0.1 448,153 + SO0427 0.74 -0.3 448,167 + SO0427 0.75 +1.0 448,215 + SO0427 0.76 +0.4 448,327 + SO0427 0.78 -0.4 448,335 - SO0427 0.78 +0.6 448,366 + SO0427 0.79 +0.3 448,374 - SO0427 0.79 -1.0 448,460 - SO0427 0.81 +0.7 448,497 + SO0427 0.82 +0.2 448,503 + SO0427 0.82 -0.1 448,503 + SO0427 0.82 +0.1 448,504 + SO0427 0.82 +0.4 448,505 - SO0427 0.82 +0.8 448,511 - SO0427 0.82 +0.1 448,511 - SO0427 0.82 +0.5 448,511 - SO0427 0.82 +0.2 448,566 - SO0427 0.84 +0.7 448,631 - SO0427 0.85 +0.4 448,691 + SO0427 0.86 -0.2 448,725 + SO0427 0.87 +0.7 448,725 + SO0427 0.87 +0.8 448,725 + SO0427 0.87 +0.1 448,725 + SO0427 0.87 -0.0 448,725 + SO0427 0.87 +0.1 448,725 + SO0427 0.87 -0.2 448,725 + SO0427 0.87 +0.1 448,725 + SO0427 0.87 +0.0 448,725 + SO0427 0.87 +0.5 448,725 + SO0427 0.87 +0.5 448,725 + SO0427 0.87 +0.3 448,725 + SO0427 0.87 -0.6 448,725 + SO0427 0.87 +0.4 448,725 + SO0427 0.87 +0.3 448,725 + SO0427 0.87 -0.0 448,725 + SO0427 0.87 +0.5 448,725 + SO0427 0.87 -0.2 448,725 + SO0427 0.87 +0.4 448,725 + SO0427 0.87 +0.7 448,727 + SO0427 0.87 -0.1 448,733 + SO0427 0.87 +0.3 448,733 - SO0427 0.87 -0.3 448,733 - SO0427 0.87 +0.6 448,733 - SO0427 0.87 +0.6 448,733 - SO0427 0.87 -0.5 448,733 - SO0427 0.87 -0.1 448,733 - SO0427 0.87 -0.3 448,733 - SO0427 0.87 +0.7 448,733 - SO0427 0.87 +0.0 448,735 + SO0427 0.87 -0.0 448,740 + SO0427 0.87 -0.1 448,750 + SO0427 0.88 +0.7 448,750 + SO0427 0.88 +0.6 448,750 + SO0427 0.88 -0.3 448,750 + SO0427 0.88 +0.1 448,750 + SO0427 0.88 +0.4 448,751 + SO0427 0.88 +1.1 448,758 - SO0427 0.88 +0.2 448,758 - SO0427 0.88 +0.6 448,771 + SO0427 0.88 +0.2 448,807 - SO0427 0.89 +0.4 448,932 + +0.1 448,950 - +0.1 448,953 + +0.3 448,961 - +0.2 448,998 + +1.4 448,998 + +0.7 448,998 + +1.5 449,000 + +0.7 449,008 - -0.0 449,084 - +0.6 449,086 + +1.2 449,086 + +0.3 449,091 + -0.3 449,091 + +0.2 449,091 + +0.7 449,094 - +0.2 449,099 - +0.4 449,099 - -0.1 449,099 - +0.2 449,100 + +0.2 449,110 + +0.3 449,110 + +0.5 449,110 + -0.4 449,110 + -0.0 449,113 + +1.4 449,118 - +0.5 449,118 - +0.8 449,139 - +0.4 449,159 + +0.1 449,159 + +0.1 449,167 + +0.7 449,167 - +0.8 449,167 - +0.1 449,167 - +0.4 449,167 - +0.6 449,169 + +0.3 449,169 + -0.0 449,175 - +0.9 449,184 - +0.6 449,184 - +0.1 449,197 - +0.3 449,203 + +0.1 449,209 - +0.5 449,234 + -0.1 449,234 + +0.3 449,234 + +1.3 449,234 + +0.2 449,234 + +0.3 449,234 + +0.3 449,234 + +0.2 449,234 + +0.5 449,234 + +0.6 449,234 + +0.3 449,234 + -0.2 449,234 + +0.6 449,241 - +0.1 449,242 - +0.1 449,242 - +0.5 449,242 - +0.7 449,242 - +0.4 449,242 - +0.6 449,242 - +0.1 449,242 - +0.3 449,242 - +1.2 449,242 - +1.0 449,242 - +0.0 449,242 - -0.6 449,242 - +1.0 449,242 - +0.3 449,242 - +0.3 449,242 - +1.3 449,242 - -0.1 449,242 - +1.0 449,263 + +0.9 449,284 - +1.2 449,319 + -0.6 449,324 + +0.3 449,327 - -1.8 449,328 - +0.1 449,344 + -0.4 449,352 - +0.2 449,352 - +0.2 449,358 + -0.3 449,373 - +0.3 449,434 + +0.0 449,469 + -0.3 449,469 + +0.4 449,477 - -0.5 449,567 + +0.3 449,575 - -0.1 449,607 - +1.0 449,615 + +0.4 449,623 - +0.2 449,632 + +0.5 449,640 - +0.1 449,640 - +0.4 449,645 + -0.5 449,667 - +0.8 449,678 + -0.5 449,747 + +0.4 449,789 + SO0428 0.12 +0.4 449,841 - SO0428 0.14 -0.2 449,970 + SO0428 0.20 +1.1 450,078 + SO0428 0.25 -0.1 450,108 + SO0428 0.26 +0.3 450,137 + SO0428 0.27 +0.3 450,191 + SO0428 0.30 +0.2 450,201 - SO0428 0.30 +0.8 450,255 - SO0428 0.33 +0.3
Or see this region's nucleotide sequence