Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_879 and HP15_880 are separated by 57 nucleotides HP15_880 and HP15_881 are separated by 4 nucleotides HP15_881 and HP15_882 are separated by 72 nucleotides
HP15_879: HP15_879 - short-chain dehydrogenase/reductase SDR, at 896,009 to 896,683
_879
HP15_880: HP15_880 - oxidoreductase, short chain dehydrogenase/reductase family, at 896,741 to 897,472
_880
HP15_881: HP15_881 - 2',5' RNA ligase, at 897,477 to 898,019
_881
HP15_882: HP15_882 - hydrolase, carbon-nitrogen family protein, at 898,092 to 899,660
_882
Position (kb) 897
898
899 Strain fitness (log2 ratio) -1
0
1
2 at 896.514 kb on + strand, within HP15_879 at 896.514 kb on + strand, within HP15_879 at 896.514 kb on + strand, within HP15_879 at 896.547 kb on + strand, within HP15_879 at 896.676 kb on - strand at 896.917 kb on + strand, within HP15_880 at 897.091 kb on - strand, within HP15_880 at 897.129 kb on + strand, within HP15_880 at 897.189 kb on - strand, within HP15_880 at 897.278 kb on + strand, within HP15_880 at 897.281 kb on - strand, within HP15_880 at 897.288 kb on + strand, within HP15_880 at 897.296 kb on - strand, within HP15_880 at 897.326 kb on + strand, within HP15_880 at 897.345 kb on + strand, within HP15_880 at 897.345 kb on + strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.448 kb on - strand at 897.566 kb on + strand, within HP15_881 at 897.579 kb on - strand, within HP15_881 at 897.579 kb on - strand, within HP15_881 at 897.587 kb on + strand, within HP15_881 at 897.646 kb on - strand, within HP15_881 at 897.747 kb on - strand, within HP15_881 at 897.851 kb on - strand, within HP15_881 at 897.918 kb on - strand, within HP15_881 at 897.955 kb on + strand, within HP15_881 at 897.963 kb on - strand, within HP15_881 at 898.144 kb on + strand at 898.238 kb on + strand at 898.246 kb on - strand at 898.246 kb on - strand at 898.411 kb on + strand, within HP15_882 at 898.492 kb on - strand, within HP15_882 at 898.642 kb on + strand, within HP15_882 at 898.643 kb on - strand, within HP15_882 at 898.720 kb on + strand, within HP15_882 at 898.809 kb on + strand, within HP15_882 at 898.908 kb on - strand, within HP15_882 at 898.920 kb on - strand, within HP15_882 at 898.968 kb on + strand, within HP15_882 at 898.968 kb on + strand, within HP15_882
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 896,514 + HP15_879 0.75 -0.7 896,514 + HP15_879 0.75 +0.4 896,514 + HP15_879 0.75 -0.1 896,547 + HP15_879 0.80 -0.5 896,676 - -0.4 896,917 + HP15_880 0.24 +0.5 897,091 - HP15_880 0.48 +0.2 897,129 + HP15_880 0.53 -0.0 897,189 - HP15_880 0.61 +0.1 897,278 + HP15_880 0.73 -0.9 897,281 - HP15_880 0.74 -0.3 897,288 + HP15_880 0.75 -1.2 897,296 - HP15_880 0.76 -0.3 897,326 + HP15_880 0.80 +0.2 897,345 + HP15_880 0.83 +0.1 897,345 + HP15_880 0.83 -1.0 897,353 - HP15_880 0.84 +0.1 897,353 - HP15_880 0.84 +0.3 897,353 - HP15_880 0.84 -0.7 897,353 - HP15_880 0.84 -0.0 897,448 - +0.2 897,566 + HP15_881 0.16 +0.3 897,579 - HP15_881 0.19 +0.2 897,579 - HP15_881 0.19 +0.3 897,587 + HP15_881 0.20 +0.8 897,646 - HP15_881 0.31 +0.3 897,747 - HP15_881 0.50 +0.1 897,851 - HP15_881 0.69 +0.9 897,918 - HP15_881 0.81 +0.8 897,955 + HP15_881 0.88 -0.2 897,963 - HP15_881 0.90 +0.3 898,144 + +0.1 898,238 + -0.4 898,246 - +1.2 898,246 - +0.0 898,411 + HP15_882 0.20 -0.3 898,492 - HP15_882 0.25 +2.1 898,642 + HP15_882 0.35 +0.1 898,643 - HP15_882 0.35 -0.7 898,720 + HP15_882 0.40 +0.2 898,809 + HP15_882 0.46 +0.6 898,908 - HP15_882 0.52 +0.6 898,920 - HP15_882 0.53 +0.3 898,968 + HP15_882 0.56 +0.6 898,968 + HP15_882 0.56 -0.4
Or see this region's nucleotide sequence