Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08810

Experiment: m.b. 2-Furfuraldehyde 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08800 and PGA1_c08810 are separated by 219 nucleotidesPGA1_c08810 and PGA1_c08820 are separated by 107 nucleotides PGA1_c08800: PGA1_c08800 - RNA polymerase sigma factor RpoD, at 909,600 to 911,588 _c08800 PGA1_c08810: PGA1_c08810 - hypothetical protein, at 911,808 to 912,107 _c08810 PGA1_c08820: PGA1_c08820 - putative oxidoreductase, at 912,215 to 912,889 _c08820 Position (kb) 911 912 913Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 911.575 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.707 kb on - strandat 911.717 kb on - strandat 911.725 kb on - strandat 911.760 kb on + strandat 911.875 kb on - strand, within PGA1_c08810at 911.882 kb on - strand, within PGA1_c08810at 911.887 kb on - strand, within PGA1_c08810at 911.887 kb on - strand, within PGA1_c08810at 911.887 kb on - strand, within PGA1_c08810at 911.934 kb on + strand, within PGA1_c08810at 911.973 kb on + strand, within PGA1_c08810at 912.003 kb on - strand, within PGA1_c08810at 912.048 kb on + strand, within PGA1_c08810at 912.075 kb on + strand, within PGA1_c08810at 912.083 kb on + strandat 912.101 kb on + strandat 912.128 kb on - strandat 912.168 kb on - strandat 912.172 kb on + strandat 912.218 kb on + strandat 912.389 kb on - strand, within PGA1_c08820at 912.496 kb on - strand, within PGA1_c08820at 912.505 kb on - strand, within PGA1_c08820at 912.528 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.551 kb on - strand, within PGA1_c08820at 912.551 kb on - strand, within PGA1_c08820at 912.551 kb on - strand, within PGA1_c08820at 912.620 kb on + strand, within PGA1_c08820at 912.628 kb on - strand, within PGA1_c08820at 912.730 kb on + strand, within PGA1_c08820at 912.730 kb on + strand, within PGA1_c08820at 912.730 kb on + strand, within PGA1_c08820at 912.738 kb on - strand, within PGA1_c08820at 912.757 kb on + strand, within PGA1_c08820at 912.823 kb on - strandat 912.823 kb on - strandat 912.849 kb on - strandat 912.940 kb on - strandat 912.963 kb on + strandat 912.968 kb on + strandat 912.987 kb on + strandat 913.046 kb on + strandat 913.046 kb on - strandat 913.066 kb on - strandat 913.088 kb on + strandat 913.090 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol%
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911,575 + -0.9
911,656 + +1.9
911,656 + +0.3
911,656 + -0.7
911,656 + -0.6
911,656 + -2.3
911,656 + -2.4
911,656 + -0.1
911,656 + +0.1
911,656 + -1.1
911,656 + -0.3
911,664 - +0.1
911,664 - +0.3
911,664 - -1.3
911,664 - -2.9
911,664 - +0.4
911,664 - -0.5
911,664 - +0.2
911,707 - +1.2
911,717 - +0.5
911,725 - -0.0
911,760 + -1.3
911,875 - PGA1_c08810 0.22 -1.3
911,882 - PGA1_c08810 0.25 -1.1
911,887 - PGA1_c08810 0.26 -2.1
911,887 - PGA1_c08810 0.26 -0.1
911,887 - PGA1_c08810 0.26 -0.2
911,934 + PGA1_c08810 0.42 -1.1
911,973 + PGA1_c08810 0.55 -0.3
912,003 - PGA1_c08810 0.65 -0.6
912,048 + PGA1_c08810 0.80 -1.0
912,075 + PGA1_c08810 0.89 -1.8
912,083 + -0.1
912,101 + -0.8
912,128 - +0.7
912,168 - +1.2
912,172 + -2.1
912,218 + -0.4
912,389 - PGA1_c08820 0.26 -0.2
912,496 - PGA1_c08820 0.42 -0.0
912,505 - PGA1_c08820 0.43 +0.4
912,528 + PGA1_c08820 0.46 -1.1
912,543 + PGA1_c08820 0.49 +0.1
912,543 + PGA1_c08820 0.49 -1.7
912,543 + PGA1_c08820 0.49 -0.5
912,543 + PGA1_c08820 0.49 +0.9
912,551 - PGA1_c08820 0.50 -1.1
912,551 - PGA1_c08820 0.50 +0.5
912,551 - PGA1_c08820 0.50 -0.7
912,620 + PGA1_c08820 0.60 +0.1
912,628 - PGA1_c08820 0.61 -0.4
912,730 + PGA1_c08820 0.76 +2.7
912,730 + PGA1_c08820 0.76 +0.4
912,730 + PGA1_c08820 0.76 +0.1
912,738 - PGA1_c08820 0.77 +0.7
912,757 + PGA1_c08820 0.80 -2.7
912,823 - -0.3
912,823 - +0.7
912,849 - -0.5
912,940 - +0.8
912,963 + -0.5
912,968 + +0.7
912,987 + +0.4
913,046 + -0.3
913,046 - +0.3
913,066 - -0.1
913,088 + -1.3
913,090 + +0.2

Or see this region's nucleotide sequence