Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07750

Experiment: m.b. 2-Furfuraldehyde 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07730 and PGA1_c07740 overlap by 4 nucleotidesPGA1_c07740 and PGA1_c07750 overlap by 8 nucleotidesPGA1_c07750 and PGA1_c07760 are separated by 12 nucleotides PGA1_c07730: PGA1_c07730 - putative zinc-binding alcohol dehydrogenase, at 800,090 to 801,070 _c07730 PGA1_c07740: PGA1_c07740 - putative gluconate 5-dehydrogenase, at 801,067 to 801,828 _c07740 PGA1_c07750: PGA1_c07750 - histidinol dehydrogenase HisD, at 801,821 to 803,128 _c07750 PGA1_c07760: PGA1_c07760 - TRAP transporter, subunit DctM, at 803,141 to 804,469 _c07760 Position (kb) 801 802 803 804Strain fitness (log2 ratio) -2 -1 0 1 2 3at 800.924 kb on - strand, within PGA1_c07730at 800.924 kb on - strand, within PGA1_c07730at 800.984 kb on + strandat 801.029 kb on + strandat 801.085 kb on - strandat 801.139 kb on - strandat 801.198 kb on - strand, within PGA1_c07740at 801.198 kb on - strand, within PGA1_c07740at 801.241 kb on + strand, within PGA1_c07740at 801.246 kb on + strand, within PGA1_c07740at 801.266 kb on + strand, within PGA1_c07740at 801.312 kb on - strand, within PGA1_c07740at 801.386 kb on + strand, within PGA1_c07740at 801.394 kb on - strand, within PGA1_c07740at 801.442 kb on + strand, within PGA1_c07740at 801.442 kb on + strand, within PGA1_c07740at 801.447 kb on + strand, within PGA1_c07740at 801.502 kb on + strand, within PGA1_c07740at 801.510 kb on - strand, within PGA1_c07740at 801.510 kb on - strand, within PGA1_c07740at 801.517 kb on - strand, within PGA1_c07740at 801.517 kb on - strand, within PGA1_c07740at 801.519 kb on + strand, within PGA1_c07740at 801.787 kb on + strandat 801.819 kb on + strandat 801.819 kb on + strandat 801.863 kb on - strandat 801.897 kb on + strandat 802.074 kb on + strand, within PGA1_c07750at 802.074 kb on + strand, within PGA1_c07750at 802.082 kb on - strand, within PGA1_c07750at 802.142 kb on + strand, within PGA1_c07750at 802.150 kb on - strand, within PGA1_c07750at 802.199 kb on - strand, within PGA1_c07750at 802.520 kb on + strand, within PGA1_c07750at 802.535 kb on - strand, within PGA1_c07750at 802.552 kb on + strand, within PGA1_c07750at 802.560 kb on - strand, within PGA1_c07750at 802.560 kb on - strand, within PGA1_c07750at 802.569 kb on - strand, within PGA1_c07750at 802.584 kb on - strand, within PGA1_c07750at 802.822 kb on - strand, within PGA1_c07750at 802.875 kb on - strand, within PGA1_c07750at 802.911 kb on + strand, within PGA1_c07750at 802.930 kb on - strand, within PGA1_c07750at 803.061 kb on + strandat 803.061 kb on + strandat 803.061 kb on + strandat 803.061 kb on + strandat 803.061 kb on + strandat 803.061 kb on + strandat 803.069 kb on - strandat 803.069 kb on - strandat 803.069 kb on - strandat 803.069 kb on - strandat 803.080 kb on + strandat 803.088 kb on - strandat 803.124 kb on - strandat 803.137 kb on - strandat 803.195 kb on + strandat 803.198 kb on - strandat 803.216 kb on + strandat 803.216 kb on + strandat 803.224 kb on - strandat 803.290 kb on + strand, within PGA1_c07760at 803.290 kb on + strand, within PGA1_c07760at 803.290 kb on + strand, within PGA1_c07760at 803.290 kb on + strand, within PGA1_c07760at 803.298 kb on - strand, within PGA1_c07760at 803.298 kb on - strand, within PGA1_c07760at 803.298 kb on - strand, within PGA1_c07760at 803.298 kb on - strand, within PGA1_c07760at 803.298 kb on - strand, within PGA1_c07760at 803.334 kb on + strand, within PGA1_c07760at 803.346 kb on + strand, within PGA1_c07760at 803.431 kb on + strand, within PGA1_c07760at 803.433 kb on + strand, within PGA1_c07760at 803.439 kb on - strand, within PGA1_c07760at 803.515 kb on + strand, within PGA1_c07760at 803.543 kb on + strand, within PGA1_c07760at 803.550 kb on + strand, within PGA1_c07760at 803.551 kb on - strand, within PGA1_c07760at 803.563 kb on + strand, within PGA1_c07760at 803.587 kb on + strand, within PGA1_c07760at 803.587 kb on + strand, within PGA1_c07760at 803.595 kb on - strand, within PGA1_c07760at 803.603 kb on - strand, within PGA1_c07760at 803.656 kb on + strand, within PGA1_c07760at 803.672 kb on - strand, within PGA1_c07760at 803.683 kb on - strand, within PGA1_c07760at 803.710 kb on + strand, within PGA1_c07760at 803.713 kb on - strand, within PGA1_c07760at 803.755 kb on + strand, within PGA1_c07760at 803.788 kb on + strand, within PGA1_c07760at 803.815 kb on + strand, within PGA1_c07760at 803.815 kb on + strand, within PGA1_c07760at 803.815 kb on + strand, within PGA1_c07760at 803.823 kb on - strand, within PGA1_c07760at 803.841 kb on + strand, within PGA1_c07760at 803.903 kb on + strand, within PGA1_c07760at 803.906 kb on - strand, within PGA1_c07760at 803.947 kb on - strand, within PGA1_c07760at 804.023 kb on + strand, within PGA1_c07760at 804.126 kb on + strand, within PGA1_c07760

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol%
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800,924 - PGA1_c07730 0.85 -1.3
800,924 - PGA1_c07730 0.85 +0.7
800,984 + +1.7
801,029 + +0.7
801,085 - -0.3
801,139 - +0.7
801,198 - PGA1_c07740 0.17 +0.7
801,198 - PGA1_c07740 0.17 +0.7
801,241 + PGA1_c07740 0.23 +0.7
801,246 + PGA1_c07740 0.23 +0.7
801,266 + PGA1_c07740 0.26 -0.7
801,312 - PGA1_c07740 0.32 +0.7
801,386 + PGA1_c07740 0.42 +0.7
801,394 - PGA1_c07740 0.43 +1.7
801,442 + PGA1_c07740 0.49 +0.7
801,442 + PGA1_c07740 0.49 +1.7
801,447 + PGA1_c07740 0.50 -0.3
801,502 + PGA1_c07740 0.57 +1.7
801,510 - PGA1_c07740 0.58 +1.7
801,510 - PGA1_c07740 0.58 -0.3
801,517 - PGA1_c07740 0.59 +0.7
801,517 - PGA1_c07740 0.59 -1.3
801,519 + PGA1_c07740 0.59 +1.2
801,787 + +0.7
801,819 + +0.7
801,819 + +1.1
801,863 - +1.2
801,897 + +1.3
802,074 + PGA1_c07750 0.19 -0.0
802,074 + PGA1_c07750 0.19 +0.7
802,082 - PGA1_c07750 0.20 +0.7
802,142 + PGA1_c07750 0.25 +3.0
802,150 - PGA1_c07750 0.25 +1.7
802,199 - PGA1_c07750 0.29 -0.9
802,520 + PGA1_c07750 0.53 -1.2
802,535 - PGA1_c07750 0.55 +2.7
802,552 + PGA1_c07750 0.56 +1.0
802,560 - PGA1_c07750 0.56 +0.7
802,560 - PGA1_c07750 0.56 -0.2
802,569 - PGA1_c07750 0.57 +0.7
802,584 - PGA1_c07750 0.58 +2.2
802,822 - PGA1_c07750 0.77 +1.0
802,875 - PGA1_c07750 0.81 +0.7
802,911 + PGA1_c07750 0.83 +0.7
802,930 - PGA1_c07750 0.85 +1.2
803,061 + +1.0
803,061 + -0.1
803,061 + +0.7
803,061 + +1.7
803,061 + -1.2
803,061 + -0.6
803,069 - +0.7
803,069 - +0.7
803,069 - +2.0
803,069 - +2.2
803,080 + +0.8
803,088 - -1.7
803,124 - -1.3
803,137 - -2.2
803,195 + +1.1
803,198 - +0.1
803,216 + -0.5
803,216 + +0.8
803,224 - -1.3
803,290 + PGA1_c07760 0.11 +0.7
803,290 + PGA1_c07760 0.11 +0.4
803,290 + PGA1_c07760 0.11 -1.7
803,290 + PGA1_c07760 0.11 +0.1
803,298 - PGA1_c07760 0.12 +0.7
803,298 - PGA1_c07760 0.12 +0.7
803,298 - PGA1_c07760 0.12 +3.0
803,298 - PGA1_c07760 0.12 +0.7
803,298 - PGA1_c07760 0.12 +0.1
803,334 + PGA1_c07760 0.15 +0.7
803,346 + PGA1_c07760 0.15 +0.4
803,431 + PGA1_c07760 0.22 +0.7
803,433 + PGA1_c07760 0.22 +0.5
803,439 - PGA1_c07760 0.22 +2.0
803,515 + PGA1_c07760 0.28 +0.7
803,543 + PGA1_c07760 0.30 -1.9
803,550 + PGA1_c07760 0.31 +1.5
803,551 - PGA1_c07760 0.31 +0.1
803,563 + PGA1_c07760 0.32 +0.2
803,587 + PGA1_c07760 0.34 +0.1
803,587 + PGA1_c07760 0.34 -0.1
803,595 - PGA1_c07760 0.34 +1.2
803,603 - PGA1_c07760 0.35 -0.9
803,656 + PGA1_c07760 0.39 -0.3
803,672 - PGA1_c07760 0.40 -0.6
803,683 - PGA1_c07760 0.41 +1.7
803,710 + PGA1_c07760 0.43 -0.3
803,713 - PGA1_c07760 0.43 +1.0
803,755 + PGA1_c07760 0.46 -1.3
803,788 + PGA1_c07760 0.49 -0.2
803,815 + PGA1_c07760 0.51 +2.2
803,815 + PGA1_c07760 0.51 +0.4
803,815 + PGA1_c07760 0.51 -1.3
803,823 - PGA1_c07760 0.51 +0.7
803,841 + PGA1_c07760 0.53 -0.9
803,903 + PGA1_c07760 0.57 +0.7
803,906 - PGA1_c07760 0.58 +2.0
803,947 - PGA1_c07760 0.61 -0.9
804,023 + PGA1_c07760 0.66 +0.4
804,126 + PGA1_c07760 0.74 -0.3

Or see this region's nucleotide sequence