Experiment: m.b. 2-Furfuraldehyde 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06320 and PGA1_c06330 overlap by 1 nucleotides PGA1_c06330 and PGA1_c06340 are separated by 63 nucleotides PGA1_c06340 and PGA1_c06350 are separated by 25 nucleotides
PGA1_c06320: PGA1_c06320 - peptidase, M16 family, at 646,761 to 648,023
_c06320
PGA1_c06330: PGA1_c06330 - putative ribosomal-protein-alanine acetyltransferase, at 648,023 to 648,613
_c06330
PGA1_c06340: PGA1_c06340 - putative FAD linked oxidase, at 648,677 to 650,101
_c06340
PGA1_c06350: PGA1_c06350 - putative MFS-type transporter, at 650,127 to 651,347
_c06350
Position (kb) 648
649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 647.843 kb on + strand, within PGA1_c06320 at 647.885 kb on + strand, within PGA1_c06320 at 647.923 kb on - strand at 647.935 kb on - strand at 648.018 kb on + strand at 648.143 kb on - strand, within PGA1_c06330 at 648.178 kb on - strand, within PGA1_c06330 at 648.199 kb on + strand, within PGA1_c06330 at 648.225 kb on + strand, within PGA1_c06330 at 648.225 kb on + strand, within PGA1_c06330 at 648.291 kb on + strand, within PGA1_c06330 at 648.338 kb on - strand, within PGA1_c06330 at 648.338 kb on - strand, within PGA1_c06330 at 648.441 kb on - strand, within PGA1_c06330 at 648.476 kb on + strand, within PGA1_c06330 at 648.486 kb on - strand, within PGA1_c06330 at 648.596 kb on - strand at 648.607 kb on + strand at 648.624 kb on + strand at 648.646 kb on + strand at 648.680 kb on + strand at 648.680 kb on + strand at 648.688 kb on - strand at 648.688 kb on - strand at 648.688 kb on - strand at 650.134 kb on + strand at 650.264 kb on - strand, within PGA1_c06350 at 650.277 kb on + strand, within PGA1_c06350 at 650.366 kb on + strand, within PGA1_c06350 at 650.374 kb on - strand, within PGA1_c06350 at 650.381 kb on - strand, within PGA1_c06350 at 650.428 kb on - strand, within PGA1_c06350 at 650.460 kb on - strand, within PGA1_c06350 at 650.462 kb on + strand, within PGA1_c06350 at 650.485 kb on - strand, within PGA1_c06350 at 650.579 kb on + strand, within PGA1_c06350 at 650.604 kb on + strand, within PGA1_c06350 at 650.718 kb on - strand, within PGA1_c06350 at 650.749 kb on + strand, within PGA1_c06350 at 650.794 kb on - strand, within PGA1_c06350 at 650.835 kb on + strand, within PGA1_c06350 at 650.843 kb on - strand, within PGA1_c06350 at 650.923 kb on + strand, within PGA1_c06350 at 650.938 kb on + strand, within PGA1_c06350 at 651.084 kb on + strand, within PGA1_c06350 at 651.097 kb on - strand, within PGA1_c06350
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol% remove 647,843 + PGA1_c06320 0.86 -1.3 647,885 + PGA1_c06320 0.89 -0.8 647,923 - +0.2 647,935 - +1.2 648,018 + -0.5 648,143 - PGA1_c06330 0.20 +0.6 648,178 - PGA1_c06330 0.26 +0.0 648,199 + PGA1_c06330 0.30 -0.6 648,225 + PGA1_c06330 0.34 -0.4 648,225 + PGA1_c06330 0.34 -0.7 648,291 + PGA1_c06330 0.45 -0.1 648,338 - PGA1_c06330 0.53 -2.2 648,338 - PGA1_c06330 0.53 -1.0 648,441 - PGA1_c06330 0.71 -1.6 648,476 + PGA1_c06330 0.77 +0.4 648,486 - PGA1_c06330 0.78 -1.6 648,596 - +0.9 648,607 + +1.2 648,624 + -0.3 648,646 + +0.5 648,680 + -1.4 648,680 + -0.1 648,688 - -1.2 648,688 - -0.2 648,688 - -0.6 650,134 + -3.6 650,264 - PGA1_c06350 0.11 +1.3 650,277 + PGA1_c06350 0.12 -0.0 650,366 + PGA1_c06350 0.20 -0.4 650,374 - PGA1_c06350 0.20 -0.5 650,381 - PGA1_c06350 0.21 -1.0 650,428 - PGA1_c06350 0.25 -2.0 650,460 - PGA1_c06350 0.27 +0.3 650,462 + PGA1_c06350 0.27 -0.4 650,485 - PGA1_c06350 0.29 -1.2 650,579 + PGA1_c06350 0.37 -1.5 650,604 + PGA1_c06350 0.39 -0.4 650,718 - PGA1_c06350 0.48 -0.3 650,749 + PGA1_c06350 0.51 -0.1 650,794 - PGA1_c06350 0.55 +0.2 650,835 + PGA1_c06350 0.58 -0.5 650,843 - PGA1_c06350 0.59 +0.8 650,923 + PGA1_c06350 0.65 -0.3 650,938 + PGA1_c06350 0.66 +2.9 651,084 + PGA1_c06350 0.78 -1.0 651,097 - PGA1_c06350 0.79 +1.3
Or see this region's nucleotide sequence