Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_590 and HP15_591 are separated by 147 nucleotides HP15_591 and HP15_592 are separated by 75 nucleotides HP15_592 and HP15_593 are separated by 127 nucleotides
HP15_590: HP15_590 - haloalkane dehalogenase, at 611,012 to 611,911
_590
HP15_591: HP15_591 - conserved hypothetical protein, at 612,059 to 612,307
_591
HP15_592: HP15_592 - conserved hypothetical protein, at 612,383 to 612,733
_592
HP15_593: HP15_593 - protein belonging to uncharacterized protein family UPF0118, at 612,861 to 613,976
_593
Position (kb) 612
613 Strain fitness (log2 ratio) -2
-1
0
1 at 611.095 kb on - strand at 611.172 kb on - strand, within HP15_590 at 611.579 kb on + strand, within HP15_590 at 611.591 kb on - strand, within HP15_590 at 611.779 kb on - strand, within HP15_590 at 612.041 kb on - strand at 612.051 kb on - strand at 612.109 kb on - strand, within HP15_591 at 612.145 kb on - strand, within HP15_591 at 612.145 kb on - strand, within HP15_591 at 612.149 kb on + strand, within HP15_591 at 612.162 kb on + strand, within HP15_591 at 612.240 kb on + strand, within HP15_591 at 612.269 kb on - strand, within HP15_591 at 612.285 kb on - strand at 612.293 kb on - strand at 612.334 kb on - strand at 612.405 kb on + strand at 612.450 kb on - strand, within HP15_592 at 612.499 kb on + strand, within HP15_592 at 612.499 kb on + strand, within HP15_592 at 612.507 kb on - strand, within HP15_592 at 612.558 kb on + strand, within HP15_592 at 612.659 kb on + strand, within HP15_592 at 612.660 kb on + strand, within HP15_592 at 612.667 kb on - strand, within HP15_592 at 612.816 kb on - strand at 612.816 kb on - strand at 612.848 kb on - strand at 613.139 kb on + strand, within HP15_593 at 613.166 kb on + strand, within HP15_593 at 613.203 kb on + strand, within HP15_593 at 613.219 kb on - strand, within HP15_593 at 613.225 kb on - strand, within HP15_593
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 611,095 - +0.8 611,172 - HP15_590 0.18 +1.2 611,579 + HP15_590 0.63 +0.0 611,591 - HP15_590 0.64 -0.5 611,779 - HP15_590 0.85 -0.6 612,041 - +0.5 612,051 - +0.2 612,109 - HP15_591 0.20 -0.6 612,145 - HP15_591 0.35 +0.7 612,145 - HP15_591 0.35 -2.4 612,149 + HP15_591 0.36 -0.3 612,162 + HP15_591 0.41 +0.7 612,240 + HP15_591 0.73 -0.3 612,269 - HP15_591 0.84 -0.7 612,285 - -0.0 612,293 - +0.9 612,334 - +0.0 612,405 + -0.5 612,450 - HP15_592 0.19 -0.1 612,499 + HP15_592 0.33 +1.1 612,499 + HP15_592 0.33 +0.2 612,507 - HP15_592 0.35 +0.0 612,558 + HP15_592 0.50 +0.3 612,659 + HP15_592 0.79 -0.0 612,660 + HP15_592 0.79 +0.7 612,667 - HP15_592 0.81 +0.5 612,816 - +0.3 612,816 - +0.2 612,848 - -0.1 613,139 + HP15_593 0.25 -1.4 613,166 + HP15_593 0.27 -0.1 613,203 + HP15_593 0.31 +0.1 613,219 - HP15_593 0.32 +0.4 613,225 - HP15_593 0.33 +0.0
Or see this region's nucleotide sequence