Experiment: m.b. 2-Furfuraldehyde 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06190 and PGA1_c06200 are separated by 64 nucleotides PGA1_c06200 and PGA1_c06210 are separated by 12 nucleotides PGA1_c06210 and PGA1_c06220 are separated by 254 nucleotides
PGA1_c06190: PGA1_c06190 - hypothetical protein, at 632,900 to 633,391
_c06190
PGA1_c06200: PGA1_c06200 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 633,456 to 634,085
_c06200
PGA1_c06210: PGA1_c06210 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 634,098 to 634,817
_c06210
PGA1_c06220: PGA1_c06220 - DNA topoisomerase TopA, at 635,072 to 637,774
_c06220
Position (kb) 634
635 Strain fitness (log2 ratio) -2
-1
0
1 at 633.103 kb on - strand, within PGA1_c06190 at 633.121 kb on + strand, within PGA1_c06190 at 633.137 kb on + strand, within PGA1_c06190 at 633.184 kb on - strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.222 kb on + strand, within PGA1_c06190 at 633.228 kb on - strand, within PGA1_c06190 at 633.257 kb on - strand, within PGA1_c06190 at 633.444 kb on + strand at 633.476 kb on + strand at 633.484 kb on - strand at 633.565 kb on - strand, within PGA1_c06200 at 633.610 kb on - strand, within PGA1_c06200 at 633.695 kb on - strand, within PGA1_c06200 at 633.705 kb on + strand, within PGA1_c06200 at 633.713 kb on - strand, within PGA1_c06200 at 633.731 kb on + strand, within PGA1_c06200 at 633.830 kb on - strand, within PGA1_c06200 at 633.857 kb on + strand, within PGA1_c06200 at 633.880 kb on + strand, within PGA1_c06200 at 633.890 kb on + strand, within PGA1_c06200 at 634.051 kb on - strand at 634.074 kb on + strand at 634.111 kb on - strand at 634.240 kb on + strand, within PGA1_c06210 at 634.414 kb on - strand, within PGA1_c06210 at 634.438 kb on + strand, within PGA1_c06210 at 634.456 kb on - strand, within PGA1_c06210 at 634.491 kb on - strand, within PGA1_c06210 at 634.583 kb on + strand, within PGA1_c06210 at 634.679 kb on - strand, within PGA1_c06210 at 634.733 kb on + strand, within PGA1_c06210 at 634.733 kb on + strand, within PGA1_c06210 at 634.779 kb on + strand at 634.834 kb on - strand at 634.853 kb on + strand at 634.853 kb on + strand at 634.861 kb on - strand at 634.935 kb on + strand at 634.974 kb on - strand at 634.976 kb on + strand at 634.976 kb on + strand at 635.018 kb on + strand at 635.034 kb on + strand at 635.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol% remove 633,103 - PGA1_c06190 0.41 -0.8 633,121 + PGA1_c06190 0.45 -1.5 633,137 + PGA1_c06190 0.48 -0.4 633,184 - PGA1_c06190 0.58 -0.3 633,201 + PGA1_c06190 0.61 +0.8 633,201 + PGA1_c06190 0.61 -0.5 633,201 + PGA1_c06190 0.61 -1.1 633,220 + PGA1_c06190 0.65 -1.0 633,220 + PGA1_c06190 0.65 -0.6 633,222 + PGA1_c06190 0.65 +0.0 633,228 - PGA1_c06190 0.67 +0.1 633,257 - PGA1_c06190 0.73 +0.2 633,444 + -1.4 633,476 + +0.3 633,484 - -0.2 633,565 - PGA1_c06200 0.17 -0.4 633,610 - PGA1_c06200 0.24 +0.6 633,695 - PGA1_c06200 0.38 +1.3 633,705 + PGA1_c06200 0.40 -0.4 633,713 - PGA1_c06200 0.41 -0.0 633,731 + PGA1_c06200 0.44 -0.7 633,830 - PGA1_c06200 0.59 -1.0 633,857 + PGA1_c06200 0.64 -0.8 633,880 + PGA1_c06200 0.67 +0.0 633,890 + PGA1_c06200 0.69 +0.4 634,051 - -0.1 634,074 + -1.7 634,111 - -1.3 634,240 + PGA1_c06210 0.20 -0.3 634,414 - PGA1_c06210 0.44 -2.0 634,438 + PGA1_c06210 0.47 -1.1 634,456 - PGA1_c06210 0.50 +0.2 634,491 - PGA1_c06210 0.55 +0.0 634,583 + PGA1_c06210 0.67 -1.2 634,679 - PGA1_c06210 0.81 -1.4 634,733 + PGA1_c06210 0.88 -0.7 634,733 + PGA1_c06210 0.88 -1.8 634,779 + -1.1 634,834 - -2.6 634,853 + +0.1 634,853 + -0.7 634,861 - -0.4 634,935 + -0.8 634,974 - -0.6 634,976 + -1.2 634,976 + -1.0 635,018 + +0.2 635,034 + -0.5 635,198 - -1.1
Or see this region's nucleotide sequence