Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06050

Experiment: m.b. 2-Furfuraldehyde 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06040 and PGA1_c06050 are separated by 74 nucleotidesPGA1_c06050 and PGA1_c06060 are separated by 183 nucleotidesPGA1_c06060 and PGA1_c06070 are separated by 19 nucleotides PGA1_c06040: PGA1_c06040 - DNA damage response helicase, ligase-associated (from data), at 616,845 to 619,280 _c06040 PGA1_c06050: PGA1_c06050 - hypothetical protein, at 619,355 to 620,662 _c06050 PGA1_c06060: PGA1_c06060 - Flp pilus assembly protein, protease CpaA, at 620,846 to 621,352 _c06060 PGA1_c06070: PGA1_c06070 - hypothetical protein, at 621,372 to 622,220 _c06070 Position (kb) 619 620 621Strain fitness (log2 ratio) -2 -1 0 1 2at 618.358 kb on - strand, within PGA1_c06040at 618.358 kb on - strand, within PGA1_c06040at 618.358 kb on - strand, within PGA1_c06040at 618.358 kb on - strand, within PGA1_c06040at 618.364 kb on + strand, within PGA1_c06040at 618.372 kb on - strand, within PGA1_c06040at 618.388 kb on + strand, within PGA1_c06040at 618.436 kb on - strand, within PGA1_c06040at 618.546 kb on - strand, within PGA1_c06040at 618.555 kb on - strand, within PGA1_c06040at 618.705 kb on + strand, within PGA1_c06040at 618.752 kb on + strand, within PGA1_c06040at 618.760 kb on - strand, within PGA1_c06040at 618.847 kb on - strand, within PGA1_c06040at 618.889 kb on - strand, within PGA1_c06040at 618.889 kb on - strand, within PGA1_c06040at 618.904 kb on - strand, within PGA1_c06040at 618.969 kb on + strand, within PGA1_c06040at 619.016 kb on + strand, within PGA1_c06040at 619.024 kb on - strand, within PGA1_c06040at 619.285 kb on + strandat 619.356 kb on + strandat 619.367 kb on + strandat 619.411 kb on + strandat 619.411 kb on + strandat 619.455 kb on + strandat 619.455 kb on + strandat 619.455 kb on + strandat 619.552 kb on + strand, within PGA1_c06050at 619.560 kb on - strand, within PGA1_c06050at 619.652 kb on - strand, within PGA1_c06050at 619.782 kb on + strand, within PGA1_c06050at 619.865 kb on - strand, within PGA1_c06050at 619.912 kb on - strand, within PGA1_c06050at 619.943 kb on - strand, within PGA1_c06050at 620.022 kb on + strand, within PGA1_c06050at 620.066 kb on + strand, within PGA1_c06050at 620.074 kb on - strand, within PGA1_c06050at 620.172 kb on - strand, within PGA1_c06050at 620.202 kb on + strand, within PGA1_c06050at 620.203 kb on + strand, within PGA1_c06050at 620.298 kb on + strand, within PGA1_c06050at 620.306 kb on - strand, within PGA1_c06050at 620.306 kb on - strand, within PGA1_c06050at 620.306 kb on - strand, within PGA1_c06050at 620.306 kb on - strand, within PGA1_c06050at 620.313 kb on + strand, within PGA1_c06050at 620.381 kb on + strand, within PGA1_c06050at 620.381 kb on + strand, within PGA1_c06050at 620.381 kb on + strand, within PGA1_c06050at 620.389 kb on - strand, within PGA1_c06050at 620.389 kb on - strand, within PGA1_c06050at 620.389 kb on - strand, within PGA1_c06050at 620.435 kb on - strand, within PGA1_c06050at 620.437 kb on + strand, within PGA1_c06050at 620.437 kb on + strand, within PGA1_c06050at 620.437 kb on + strand, within PGA1_c06050at 620.445 kb on - strand, within PGA1_c06050at 620.445 kb on - strand, within PGA1_c06050at 620.445 kb on - strand, within PGA1_c06050at 620.485 kb on + strand, within PGA1_c06050at 620.572 kb on + strandat 620.616 kb on - strandat 620.686 kb on + strandat 620.694 kb on - strandat 620.741 kb on + strandat 620.749 kb on - strandat 620.755 kb on + strandat 620.763 kb on - strandat 620.787 kb on + strandat 620.787 kb on + strandat 620.787 kb on + strandat 620.831 kb on - strandat 620.831 kb on - strandat 620.831 kb on - strandat 620.841 kb on - strandat 620.841 kb on - strandat 620.876 kb on + strandat 620.919 kb on - strand, within PGA1_c06060at 620.962 kb on + strand, within PGA1_c06060at 620.979 kb on + strand, within PGA1_c06060at 621.046 kb on - strand, within PGA1_c06060at 621.075 kb on - strand, within PGA1_c06060at 621.103 kb on + strand, within PGA1_c06060at 621.265 kb on - strand, within PGA1_c06060at 621.294 kb on - strand, within PGA1_c06060at 621.494 kb on + strand, within PGA1_c06070at 621.534 kb on - strand, within PGA1_c06070

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol%
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618,358 - PGA1_c06040 0.62 +0.6
618,358 - PGA1_c06040 0.62 +0.3
618,358 - PGA1_c06040 0.62 +0.6
618,358 - PGA1_c06040 0.62 -1.3
618,364 + PGA1_c06040 0.62 +0.6
618,372 - PGA1_c06040 0.63 -0.4
618,388 + PGA1_c06040 0.63 -1.7
618,436 - PGA1_c06040 0.65 -0.1
618,546 - PGA1_c06040 0.70 -1.0
618,555 - PGA1_c06040 0.70 -2.6
618,705 + PGA1_c06040 0.76 -0.7
618,752 + PGA1_c06040 0.78 -1.3
618,760 - PGA1_c06040 0.79 +0.6
618,847 - PGA1_c06040 0.82 +0.2
618,889 - PGA1_c06040 0.84 +0.3
618,889 - PGA1_c06040 0.84 +1.6
618,904 - PGA1_c06040 0.85 +0.0
618,969 + PGA1_c06040 0.87 -1.4
619,016 + PGA1_c06040 0.89 +1.0
619,024 - PGA1_c06040 0.89 -1.6
619,285 + -1.2
619,356 + -1.8
619,367 + +0.6
619,411 + -0.4
619,411 + +0.0
619,455 + -1.0
619,455 + -0.6
619,455 + -1.0
619,552 + PGA1_c06050 0.15 -0.9
619,560 - PGA1_c06050 0.16 -0.4
619,652 - PGA1_c06050 0.23 +0.6
619,782 + PGA1_c06050 0.33 +2.2
619,865 - PGA1_c06050 0.39 -0.2
619,912 - PGA1_c06050 0.43 -1.0
619,943 - PGA1_c06050 0.45 +0.6
620,022 + PGA1_c06050 0.51 -0.7
620,066 + PGA1_c06050 0.54 +0.2
620,074 - PGA1_c06050 0.55 -1.4
620,172 - PGA1_c06050 0.62 -1.4
620,202 + PGA1_c06050 0.65 +0.2
620,203 + PGA1_c06050 0.65 -1.2
620,298 + PGA1_c06050 0.72 +0.6
620,306 - PGA1_c06050 0.73 -1.0
620,306 - PGA1_c06050 0.73 +1.6
620,306 - PGA1_c06050 0.73 +0.6
620,306 - PGA1_c06050 0.73 -1.4
620,313 + PGA1_c06050 0.73 -0.4
620,381 + PGA1_c06050 0.78 -0.4
620,381 + PGA1_c06050 0.78 +0.6
620,381 + PGA1_c06050 0.78 +0.6
620,389 - PGA1_c06050 0.79 -1.4
620,389 - PGA1_c06050 0.79 -2.0
620,389 - PGA1_c06050 0.79 -1.4
620,435 - PGA1_c06050 0.83 -0.4
620,437 + PGA1_c06050 0.83 -0.1
620,437 + PGA1_c06050 0.83 +0.2
620,437 + PGA1_c06050 0.83 -0.4
620,445 - PGA1_c06050 0.83 +0.0
620,445 - PGA1_c06050 0.83 -0.4
620,445 - PGA1_c06050 0.83 +0.2
620,485 + PGA1_c06050 0.86 +0.6
620,572 + -1.7
620,616 - +2.4
620,686 + +1.6
620,694 - -0.4
620,741 + -1.4
620,749 - +1.0
620,755 + +0.0
620,763 - -1.4
620,787 + +0.6
620,787 + -1.4
620,787 + +0.6
620,831 - -0.1
620,831 - +0.6
620,831 - +1.6
620,841 - -0.4
620,841 - +0.6
620,876 + -1.4
620,919 - PGA1_c06060 0.14 +0.4
620,962 + PGA1_c06060 0.23 -0.4
620,979 + PGA1_c06060 0.26 -1.4
621,046 - PGA1_c06060 0.39 -2.7
621,075 - PGA1_c06060 0.45 -2.7
621,103 + PGA1_c06060 0.51 +0.2
621,265 - PGA1_c06060 0.83 +2.2
621,294 - PGA1_c06060 0.88 +0.6
621,494 + PGA1_c06070 0.14 -0.4
621,534 - PGA1_c06070 0.19 -0.4

Or see this region's nucleotide sequence