Experiment: m.b. 2-Furfuraldehyde 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05970 and PGA1_c05980 are separated by 184 nucleotides PGA1_c05980 and PGA1_c05990 are separated by 222 nucleotides
PGA1_c05970: PGA1_c05970 - ATP-dependent zinc metalloprotease FtsH, at 609,640 to 611,553
_c05970
PGA1_c05980: PGA1_c05980 - Uncharacterized protein conserved in bacteria, at 611,738 to 612,316
_c05980
PGA1_c05990: PGA1_c05990 - formate--tetrahydrofolate ligase Fhs, at 612,539 to 614,215
_c05990
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 611.466 kb on - strand at 611.594 kb on + strand at 611.594 kb on + strand at 611.625 kb on + strand at 611.670 kb on + strand at 611.683 kb on + strand at 611.996 kb on + strand, within PGA1_c05980 at 612.047 kb on - strand, within PGA1_c05980 at 612.144 kb on + strand, within PGA1_c05980 at 612.235 kb on - strand, within PGA1_c05980 at 612.237 kb on + strand, within PGA1_c05980 at 612.240 kb on - strand, within PGA1_c05980 at 612.246 kb on + strand, within PGA1_c05980 at 612.264 kb on - strand at 612.330 kb on - strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.498 kb on + strand at 612.542 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.583 kb on - strand at 612.662 kb on - strand at 612.773 kb on + strand, within PGA1_c05990 at 612.931 kb on - strand, within PGA1_c05990 at 613.096 kb on + strand, within PGA1_c05990 at 613.139 kb on - strand, within PGA1_c05990 at 613.140 kb on + strand, within PGA1_c05990 at 613.176 kb on - strand, within PGA1_c05990 at 613.195 kb on + strand, within PGA1_c05990 at 613.293 kb on - strand, within PGA1_c05990 at 613.312 kb on + strand, within PGA1_c05990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol% remove 611,466 - +0.4 611,594 + -0.6 611,594 + -1.7 611,625 + -0.1 611,670 + +0.9 611,683 + -0.0 611,996 + PGA1_c05980 0.45 +0.3 612,047 - PGA1_c05980 0.53 -1.5 612,144 + PGA1_c05980 0.70 -2.2 612,235 - PGA1_c05980 0.86 -1.2 612,237 + PGA1_c05980 0.86 -2.3 612,240 - PGA1_c05980 0.87 -0.8 612,246 + PGA1_c05980 0.88 -2.0 612,264 - +1.3 612,330 - -2.6 612,396 + -0.2 612,396 + +1.0 612,396 + -0.4 612,396 + -0.4 612,396 + +1.3 612,396 + -0.2 612,396 + -0.7 612,396 + +0.9 612,396 + -0.1 612,404 - -0.8 612,404 - +0.6 612,404 - -0.1 612,404 - +0.8 612,404 - +0.1 612,404 - -1.5 612,404 - +1.0 612,404 - -2.4 612,404 - -0.9 612,498 + -0.7 612,542 + +0.2 612,575 + -1.7 612,575 + +1.2 612,575 + +0.0 612,575 + -1.0 612,583 - -0.7 612,662 - -2.1 612,773 + PGA1_c05990 0.14 -2.2 612,931 - PGA1_c05990 0.23 +2.2 613,096 + PGA1_c05990 0.33 +0.6 613,139 - PGA1_c05990 0.36 +0.6 613,140 + PGA1_c05990 0.36 -0.7 613,176 - PGA1_c05990 0.38 -3.0 613,195 + PGA1_c05990 0.39 -1.7 613,293 - PGA1_c05990 0.45 -0.4 613,312 + PGA1_c05990 0.46 -1.7
Or see this region's nucleotide sequence