Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4023 and HP15_4024 are separated by 382 nucleotides HP15_4024 and HP15_4025 are separated by 50 nucleotides HP15_4025 and HP15_4026 overlap by 4 nucleotides HP15_4026 and HP15_4027 are separated by 14 nucleotides
HP15_4023: HP15_4023 - helix-turn-helix, Fis-type, at 4,260,364 to 4,262,070
_4023
HP15_4024: HP15_4024 - phenol hydroxylase subunit, at 4,262,453 to 4,262,713
_4024
HP15_4025: HP15_4025 - phenol hydroxylase component, at 4,262,764 to 4,263,765
_4025
HP15_4026: HP15_4026 - monooxygenase component MmoB/DmpM, at 4,263,762 to 4,264,031
_4026
HP15_4027: HP15_4027 - phenol hydroxylase oxygenase component, at 4,264,046 to 4,265,593
_4027
Position (kb) 4262
4263
4264 Strain fitness (log2 ratio) -1
0
1 at 4261.784 kb on - strand, within HP15_4023 at 4261.844 kb on - strand, within HP15_4023 at 4261.901 kb on - strand at 4262.093 kb on + strand at 4262.098 kb on + strand at 4262.106 kb on - strand at 4262.116 kb on + strand at 4262.124 kb on - strand at 4262.313 kb on - strand at 4262.402 kb on - strand at 4262.524 kb on + strand, within HP15_4024 at 4262.559 kb on + strand, within HP15_4024 at 4262.620 kb on + strand, within HP15_4024 at 4262.620 kb on + strand, within HP15_4024 at 4262.810 kb on + strand at 4263.008 kb on - strand, within HP15_4025 at 4263.064 kb on - strand, within HP15_4025 at 4263.064 kb on - strand, within HP15_4025 at 4263.154 kb on - strand, within HP15_4025 at 4263.256 kb on - strand, within HP15_4025 at 4263.274 kb on + strand, within HP15_4025 at 4263.323 kb on - strand, within HP15_4025 at 4263.409 kb on - strand, within HP15_4025 at 4263.412 kb on + strand, within HP15_4025 at 4263.508 kb on - strand, within HP15_4025 at 4263.530 kb on + strand, within HP15_4025 at 4263.530 kb on + strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.552 kb on + strand, within HP15_4025 at 4263.552 kb on + strand, within HP15_4025 at 4263.604 kb on - strand, within HP15_4025 at 4263.754 kb on - strand at 4263.938 kb on + strand, within HP15_4026 at 4264.115 kb on + strand at 4264.149 kb on - strand at 4264.288 kb on + strand, within HP15_4027 at 4264.369 kb on - strand, within HP15_4027 at 4264.384 kb on + strand, within HP15_4027 at 4264.397 kb on - strand, within HP15_4027 at 4264.408 kb on + strand, within HP15_4027 at 4264.408 kb on + strand, within HP15_4027 at 4264.445 kb on - strand, within HP15_4027 at 4264.472 kb on - strand, within HP15_4027 at 4264.518 kb on - strand, within HP15_4027 at 4264.665 kb on - strand, within HP15_4027 at 4264.743 kb on - strand, within HP15_4027 at 4264.764 kb on + strand, within HP15_4027
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 4,261,784 - HP15_4023 0.83 -1.6 4,261,844 - HP15_4023 0.87 -0.6 4,261,901 - +1.2 4,262,093 + +0.5 4,262,098 + +0.3 4,262,106 - -0.9 4,262,116 + -0.3 4,262,124 - +0.9 4,262,313 - -0.2 4,262,402 - +0.3 4,262,524 + HP15_4024 0.27 -0.0 4,262,559 + HP15_4024 0.41 +0.5 4,262,620 + HP15_4024 0.64 +0.2 4,262,620 + HP15_4024 0.64 +0.1 4,262,810 + +0.5 4,263,008 - HP15_4025 0.24 +0.1 4,263,064 - HP15_4025 0.30 -0.2 4,263,064 - HP15_4025 0.30 +0.1 4,263,154 - HP15_4025 0.39 -0.2 4,263,256 - HP15_4025 0.49 +0.2 4,263,274 + HP15_4025 0.51 +0.1 4,263,323 - HP15_4025 0.56 +0.2 4,263,409 - HP15_4025 0.64 +0.7 4,263,412 + HP15_4025 0.65 -0.5 4,263,508 - HP15_4025 0.74 -0.4 4,263,530 + HP15_4025 0.76 -0.4 4,263,530 + HP15_4025 0.76 +0.1 4,263,538 - HP15_4025 0.77 -1.0 4,263,538 - HP15_4025 0.77 -0.5 4,263,538 - HP15_4025 0.77 -0.6 4,263,552 + HP15_4025 0.79 -1.5 4,263,552 + HP15_4025 0.79 -0.1 4,263,604 - HP15_4025 0.84 -0.5 4,263,754 - +0.4 4,263,938 + HP15_4026 0.65 -0.3 4,264,115 + -0.1 4,264,149 - -0.4 4,264,288 + HP15_4027 0.16 +0.1 4,264,369 - HP15_4027 0.21 +0.4 4,264,384 + HP15_4027 0.22 -0.4 4,264,397 - HP15_4027 0.23 +0.5 4,264,408 + HP15_4027 0.23 -0.0 4,264,408 + HP15_4027 0.23 +0.0 4,264,445 - HP15_4027 0.26 +0.9 4,264,472 - HP15_4027 0.28 -1.1 4,264,518 - HP15_4027 0.30 +0.1 4,264,665 - HP15_4027 0.40 -1.5 4,264,743 - HP15_4027 0.45 -1.3 4,264,764 + HP15_4027 0.46 -0.2
Or see this region's nucleotide sequence