Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3242 and HP15_3243 are separated by 9 nucleotides HP15_3243 and HP15_3244 are separated by 116 nucleotides HP15_3244 and HP15_3245 are separated by 9 nucleotides
HP15_3242: HP15_3242 - ferric uptake regulator, CjrA, predicted, at 3,396,473 to 3,397,483
_3242
HP15_3243: HP15_3243 - appr-1-p processing domain protein, at 3,397,493 to 3,398,026
_3243
HP15_3244: HP15_3244 - uncharacterized conserved protein UCP029033, periplasmic protein, at 3,398,143 to 3,398,853
_3244
HP15_3245: HP15_3245 - hyaluronidase, at 3,398,863 to 3,399,987
_3245
Position (kb)
3398
3399 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3397.219 kb on + strand, within HP15_3242 at 3397.227 kb on - strand, within HP15_3242 at 3397.318 kb on + strand, within HP15_3242 at 3397.318 kb on - strand, within HP15_3242 at 3397.346 kb on + strand, within HP15_3242 at 3397.349 kb on - strand, within HP15_3242 at 3397.363 kb on + strand, within HP15_3242 at 3397.391 kb on - strand at 3397.520 kb on + strand at 3397.540 kb on - strand at 3397.638 kb on + strand, within HP15_3243 at 3397.655 kb on + strand, within HP15_3243 at 3397.721 kb on - strand, within HP15_3243 at 3397.829 kb on + strand, within HP15_3243 at 3397.837 kb on - strand, within HP15_3243 at 3397.837 kb on - strand, within HP15_3243 at 3397.843 kb on + strand, within HP15_3243 at 3398.075 kb on + strand at 3398.076 kb on - strand at 3398.199 kb on + strand at 3398.212 kb on - strand at 3398.217 kb on - strand, within HP15_3244 at 3398.262 kb on - strand, within HP15_3244 at 3398.312 kb on + strand, within HP15_3244 at 3398.335 kb on + strand, within HP15_3244 at 3398.392 kb on - strand, within HP15_3244 at 3398.445 kb on + strand, within HP15_3244 at 3398.450 kb on + strand, within HP15_3244 at 3398.475 kb on + strand, within HP15_3244 at 3398.521 kb on - strand, within HP15_3244 at 3398.521 kb on - strand, within HP15_3244 at 3398.542 kb on + strand, within HP15_3244 at 3398.555 kb on - strand, within HP15_3244 at 3398.576 kb on - strand, within HP15_3244 at 3398.590 kb on + strand, within HP15_3244 at 3398.661 kb on + strand, within HP15_3244 at 3398.676 kb on - strand, within HP15_3244 at 3398.791 kb on - strand at 3399.124 kb on - strand, within HP15_3245
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 3,397,219 + HP15_3242 0.74 +1.1 3,397,227 - HP15_3242 0.75 -0.3 3,397,318 + HP15_3242 0.84 -1.0 3,397,318 - HP15_3242 0.84 +0.7 3,397,346 + HP15_3242 0.86 +0.1 3,397,349 - HP15_3242 0.87 +0.2 3,397,363 + HP15_3242 0.88 +2.7 3,397,391 - +0.5 3,397,520 + -0.4 3,397,540 - +1.4 3,397,638 + HP15_3243 0.27 +0.0 3,397,655 + HP15_3243 0.30 +0.6 3,397,721 - HP15_3243 0.43 -0.6 3,397,829 + HP15_3243 0.63 +1.7 3,397,837 - HP15_3243 0.64 +0.3 3,397,837 - HP15_3243 0.64 +0.8 3,397,843 + HP15_3243 0.66 +0.2 3,398,075 + -0.2 3,398,076 - -0.1 3,398,199 + -0.2 3,398,212 - -0.5 3,398,217 - HP15_3244 0.10 +0.2 3,398,262 - HP15_3244 0.17 +0.2 3,398,312 + HP15_3244 0.24 +0.4 3,398,335 + HP15_3244 0.27 +0.4 3,398,392 - HP15_3244 0.35 +0.2 3,398,445 + HP15_3244 0.42 -0.1 3,398,450 + HP15_3244 0.43 -0.4 3,398,475 + HP15_3244 0.47 +0.1 3,398,521 - HP15_3244 0.53 -2.5 3,398,521 - HP15_3244 0.53 -1.9 3,398,542 + HP15_3244 0.56 +0.2 3,398,555 - HP15_3244 0.58 -0.9 3,398,576 - HP15_3244 0.61 -1.6 3,398,590 + HP15_3244 0.63 +0.3 3,398,661 + HP15_3244 0.73 -0.2 3,398,676 - HP15_3244 0.75 -0.2 3,398,791 - +0.1 3,399,124 - HP15_3245 0.23 -0.1
Or see this region's nucleotide sequence