Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32710

Experiment: m.b. 2-Furfuraldehyde 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32700 and PGA1_c32710 are separated by 118 nucleotidesPGA1_c32710 and PGA1_c32720 are separated by 99 nucleotides PGA1_c32700: PGA1_c32700 - putative saccharopine dehydrogenase (NADP+, L-glutamate-forming), at 3,427,604 to 3,428,746 _c32700 PGA1_c32710: PGA1_c32710 - Protein of unknown function (DUF3775)., at 3,428,865 to 3,429,188 _c32710 PGA1_c32720: PGA1_c32720 - putative adenylate and guanylate cyclase, at 3,429,288 to 3,430,589 _c32720 Position (kb) 3428 3429 3430Strain fitness (log2 ratio) -2 -1 0 1 2at 3427.870 kb on - strand, within PGA1_c32700at 3427.870 kb on - strand, within PGA1_c32700at 3427.884 kb on - strand, within PGA1_c32700at 3427.896 kb on + strand, within PGA1_c32700at 3427.902 kb on + strand, within PGA1_c32700at 3428.010 kb on + strand, within PGA1_c32700at 3428.010 kb on + strand, within PGA1_c32700at 3428.010 kb on + strand, within PGA1_c32700at 3428.010 kb on + strand, within PGA1_c32700at 3428.018 kb on - strand, within PGA1_c32700at 3428.018 kb on - strand, within PGA1_c32700at 3428.018 kb on - strand, within PGA1_c32700at 3428.056 kb on - strand, within PGA1_c32700at 3428.076 kb on - strand, within PGA1_c32700at 3428.076 kb on - strand, within PGA1_c32700at 3428.176 kb on - strand, within PGA1_c32700at 3428.176 kb on - strand, within PGA1_c32700at 3428.179 kb on + strand, within PGA1_c32700at 3428.187 kb on - strand, within PGA1_c32700at 3428.224 kb on - strand, within PGA1_c32700at 3428.229 kb on - strand, within PGA1_c32700at 3428.229 kb on - strand, within PGA1_c32700at 3428.229 kb on - strand, within PGA1_c32700at 3428.271 kb on + strand, within PGA1_c32700at 3428.298 kb on + strand, within PGA1_c32700at 3428.314 kb on - strand, within PGA1_c32700at 3428.314 kb on - strand, within PGA1_c32700at 3428.348 kb on + strand, within PGA1_c32700at 3428.354 kb on - strand, within PGA1_c32700at 3428.368 kb on + strand, within PGA1_c32700at 3428.385 kb on + strand, within PGA1_c32700at 3428.410 kb on - strand, within PGA1_c32700at 3428.502 kb on - strand, within PGA1_c32700at 3428.556 kb on - strand, within PGA1_c32700at 3428.573 kb on + strand, within PGA1_c32700at 3428.605 kb on - strand, within PGA1_c32700at 3428.652 kb on + strandat 3428.711 kb on + strandat 3428.711 kb on + strandat 3428.719 kb on + strandat 3428.734 kb on - strandat 3428.758 kb on + strandat 3428.766 kb on - strandat 3428.766 kb on - strandat 3428.777 kb on - strandat 3428.777 kb on - strandat 3428.777 kb on - strandat 3428.811 kb on + strandat 3428.844 kb on - strandat 3428.885 kb on + strandat 3428.893 kb on - strandat 3428.900 kb on + strand, within PGA1_c32710at 3429.037 kb on - strand, within PGA1_c32710at 3429.119 kb on - strand, within PGA1_c32710at 3429.144 kb on + strand, within PGA1_c32710at 3429.152 kb on - strand, within PGA1_c32710at 3429.232 kb on - strandat 3429.250 kb on + strandat 3429.294 kb on - strandat 3429.343 kb on - strandat 3429.381 kb on - strandat 3429.390 kb on + strandat 3429.409 kb on + strandat 3429.438 kb on + strand, within PGA1_c32720at 3429.462 kb on + strand, within PGA1_c32720at 3429.470 kb on - strand, within PGA1_c32720at 3429.492 kb on - strand, within PGA1_c32720at 3429.582 kb on - strand, within PGA1_c32720at 3429.625 kb on + strand, within PGA1_c32720at 3429.625 kb on + strand, within PGA1_c32720at 3429.630 kb on + strand, within PGA1_c32720at 3429.630 kb on + strand, within PGA1_c32720at 3429.633 kb on - strand, within PGA1_c32720at 3429.673 kb on - strand, within PGA1_c32720at 3429.674 kb on + strand, within PGA1_c32720at 3429.747 kb on + strand, within PGA1_c32720at 3429.747 kb on + strand, within PGA1_c32720at 3429.747 kb on - strand, within PGA1_c32720at 3429.755 kb on - strand, within PGA1_c32720at 3429.755 kb on - strand, within PGA1_c32720at 3429.797 kb on + strand, within PGA1_c32720at 3429.805 kb on - strand, within PGA1_c32720at 3429.805 kb on - strand, within PGA1_c32720at 3429.813 kb on + strand, within PGA1_c32720at 3430.014 kb on - strand, within PGA1_c32720at 3430.019 kb on - strand, within PGA1_c32720at 3430.060 kb on - strand, within PGA1_c32720at 3430.060 kb on - strand, within PGA1_c32720at 3430.062 kb on + strand, within PGA1_c32720at 3430.072 kb on - strand, within PGA1_c32720at 3430.089 kb on - strand, within PGA1_c32720at 3430.097 kb on + strand, within PGA1_c32720at 3430.141 kb on + strand, within PGA1_c32720at 3430.149 kb on - strand, within PGA1_c32720at 3430.149 kb on - strand, within PGA1_c32720

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol%
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3,427,870 - PGA1_c32700 0.23 -0.6
3,427,870 - PGA1_c32700 0.23 -0.0
3,427,884 - PGA1_c32700 0.24 -0.6
3,427,896 + PGA1_c32700 0.26 -0.2
3,427,902 + PGA1_c32700 0.26 -0.0
3,428,010 + PGA1_c32700 0.36 -0.7
3,428,010 + PGA1_c32700 0.36 +0.7
3,428,010 + PGA1_c32700 0.36 +0.9
3,428,010 + PGA1_c32700 0.36 +0.1
3,428,018 - PGA1_c32700 0.36 -1.2
3,428,018 - PGA1_c32700 0.36 +1.0
3,428,018 - PGA1_c32700 0.36 +0.1
3,428,056 - PGA1_c32700 0.40 +0.8
3,428,076 - PGA1_c32700 0.41 -0.1
3,428,076 - PGA1_c32700 0.41 -0.5
3,428,176 - PGA1_c32700 0.50 +1.7
3,428,176 - PGA1_c32700 0.50 -0.5
3,428,179 + PGA1_c32700 0.50 +1.2
3,428,187 - PGA1_c32700 0.51 -1.5
3,428,224 - PGA1_c32700 0.54 +0.2
3,428,229 - PGA1_c32700 0.55 +0.8
3,428,229 - PGA1_c32700 0.55 -0.2
3,428,229 - PGA1_c32700 0.55 +0.6
3,428,271 + PGA1_c32700 0.58 +1.0
3,428,298 + PGA1_c32700 0.61 +1.0
3,428,314 - PGA1_c32700 0.62 -0.8
3,428,314 - PGA1_c32700 0.62 -0.2
3,428,348 + PGA1_c32700 0.65 +2.4
3,428,354 - PGA1_c32700 0.66 -1.0
3,428,368 + PGA1_c32700 0.67 +0.1
3,428,385 + PGA1_c32700 0.68 +0.7
3,428,410 - PGA1_c32700 0.71 -0.6
3,428,502 - PGA1_c32700 0.79 -0.3
3,428,556 - PGA1_c32700 0.83 -0.3
3,428,573 + PGA1_c32700 0.85 +1.3
3,428,605 - PGA1_c32700 0.88 -0.1
3,428,652 + -1.7
3,428,711 + -1.3
3,428,711 + +1.2
3,428,719 + +0.4
3,428,734 - +0.8
3,428,758 + -1.6
3,428,766 - +0.4
3,428,766 - -0.6
3,428,777 - -0.3
3,428,777 - -1.5
3,428,777 - +1.2
3,428,811 + -2.5
3,428,844 - -1.2
3,428,885 + +0.2
3,428,893 - -0.5
3,428,900 + PGA1_c32710 0.11 +0.7
3,429,037 - PGA1_c32710 0.53 +0.5
3,429,119 - PGA1_c32710 0.78 +0.4
3,429,144 + PGA1_c32710 0.86 +0.2
3,429,152 - PGA1_c32710 0.89 +0.3
3,429,232 - +0.2
3,429,250 + -0.2
3,429,294 - -0.2
3,429,343 - +1.1
3,429,381 - +1.1
3,429,390 + +0.7
3,429,409 + +0.1
3,429,438 + PGA1_c32720 0.12 -1.1
3,429,462 + PGA1_c32720 0.13 -0.8
3,429,470 - PGA1_c32720 0.14 -2.4
3,429,492 - PGA1_c32720 0.16 -0.1
3,429,582 - PGA1_c32720 0.23 -0.6
3,429,625 + PGA1_c32720 0.26 +0.1
3,429,625 + PGA1_c32720 0.26 -0.3
3,429,630 + PGA1_c32720 0.26 -0.4
3,429,630 + PGA1_c32720 0.26 -0.9
3,429,633 - PGA1_c32720 0.26 +0.8
3,429,673 - PGA1_c32720 0.30 +0.4
3,429,674 + PGA1_c32720 0.30 +0.1
3,429,747 + PGA1_c32720 0.35 -1.0
3,429,747 + PGA1_c32720 0.35 +0.1
3,429,747 - PGA1_c32720 0.35 -0.1
3,429,755 - PGA1_c32720 0.36 +1.5
3,429,755 - PGA1_c32720 0.36 +0.8
3,429,797 + PGA1_c32720 0.39 +1.1
3,429,805 - PGA1_c32720 0.40 -2.4
3,429,805 - PGA1_c32720 0.40 -1.4
3,429,813 + PGA1_c32720 0.40 -0.2
3,430,014 - PGA1_c32720 0.56 +0.3
3,430,019 - PGA1_c32720 0.56 +0.6
3,430,060 - PGA1_c32720 0.59 -1.2
3,430,060 - PGA1_c32720 0.59 +0.8
3,430,062 + PGA1_c32720 0.59 -1.6
3,430,072 - PGA1_c32720 0.60 -1.1
3,430,089 - PGA1_c32720 0.62 -0.3
3,430,097 + PGA1_c32720 0.62 -0.2
3,430,141 + PGA1_c32720 0.66 +0.6
3,430,149 - PGA1_c32720 0.66 -0.8
3,430,149 - PGA1_c32720 0.66 +0.3

Or see this region's nucleotide sequence