Experiment: m.b. 2-Furfuraldehyde 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c25720 and PGA1_c25730 are separated by 116 nucleotides PGA1_c25730 and PGA1_c25740 are separated by 261 nucleotides
PGA1_c25720: PGA1_c25720 - transcriptional regulator, LysR family, at 2,679,349 to 2,680,221
_c25720
PGA1_c25730: PGA1_c25730 - Uncharacterized conserved protein, at 2,680,338 to 2,680,619
_c25730
PGA1_c25740: PGA1_c25740 - formate dehydrogenase H, at 2,680,881 to 2,683,655
_c25740
Position (kb)
2680
2681 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2679.356 kb on + strand at 2679.381 kb on + strand at 2679.435 kb on - strand at 2679.508 kb on - strand, within PGA1_c25720 at 2679.527 kb on - strand, within PGA1_c25720 at 2679.537 kb on - strand, within PGA1_c25720 at 2679.580 kb on - strand, within PGA1_c25720 at 2679.652 kb on + strand, within PGA1_c25720 at 2679.733 kb on + strand, within PGA1_c25720 at 2679.771 kb on - strand, within PGA1_c25720 at 2679.840 kb on + strand, within PGA1_c25720 at 2679.853 kb on - strand, within PGA1_c25720 at 2679.893 kb on + strand, within PGA1_c25720 at 2679.901 kb on - strand, within PGA1_c25720 at 2679.973 kb on + strand, within PGA1_c25720 at 2679.973 kb on + strand, within PGA1_c25720 at 2679.973 kb on + strand, within PGA1_c25720 at 2679.981 kb on - strand, within PGA1_c25720 at 2679.981 kb on - strand, within PGA1_c25720 at 2679.981 kb on - strand, within PGA1_c25720 at 2679.981 kb on - strand, within PGA1_c25720 at 2679.981 kb on - strand, within PGA1_c25720 at 2680.121 kb on + strand, within PGA1_c25720 at 2680.154 kb on - strand at 2680.304 kb on + strand at 2680.379 kb on + strand, within PGA1_c25730 at 2680.386 kb on + strand, within PGA1_c25730 at 2680.416 kb on - strand, within PGA1_c25730 at 2680.437 kb on + strand, within PGA1_c25730 at 2680.437 kb on + strand, within PGA1_c25730 at 2680.437 kb on - strand, within PGA1_c25730 at 2680.445 kb on - strand, within PGA1_c25730 at 2680.445 kb on - strand, within PGA1_c25730 at 2680.450 kb on - strand, within PGA1_c25730 at 2680.462 kb on + strand, within PGA1_c25730 at 2680.472 kb on - strand, within PGA1_c25730 at 2680.520 kb on + strand, within PGA1_c25730 at 2680.527 kb on - strand, within PGA1_c25730 at 2680.538 kb on - strand, within PGA1_c25730 at 2680.544 kb on - strand, within PGA1_c25730 at 2680.573 kb on - strand, within PGA1_c25730 at 2680.585 kb on + strand, within PGA1_c25730 at 2680.675 kb on - strand at 2680.702 kb on + strand at 2680.855 kb on + strand at 2680.861 kb on + strand at 2680.888 kb on + strand at 2680.888 kb on + strand at 2680.916 kb on - strand at 2680.959 kb on + strand at 2680.959 kb on + strand at 2680.967 kb on - strand at 2680.975 kb on + strand at 2681.004 kb on + strand at 2681.113 kb on - strand at 2681.113 kb on - strand at 2681.113 kb on - strand at 2681.394 kb on + strand, within PGA1_c25740 at 2681.394 kb on + strand, within PGA1_c25740 at 2681.405 kb on + strand, within PGA1_c25740 at 2681.481 kb on + strand, within PGA1_c25740 at 2681.546 kb on - strand, within PGA1_c25740 at 2681.592 kb on - strand, within PGA1_c25740
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol% remove 2,679,356 + -0.4 2,679,381 + +0.2 2,679,435 - +0.6 2,679,508 - PGA1_c25720 0.18 -0.6 2,679,527 - PGA1_c25720 0.20 -1.8 2,679,537 - PGA1_c25720 0.22 +0.6 2,679,580 - PGA1_c25720 0.26 +0.6 2,679,652 + PGA1_c25720 0.35 +0.3 2,679,733 + PGA1_c25720 0.44 -1.5 2,679,771 - PGA1_c25720 0.48 +0.6 2,679,840 + PGA1_c25720 0.56 -1.2 2,679,853 - PGA1_c25720 0.58 +1.2 2,679,893 + PGA1_c25720 0.62 -0.4 2,679,901 - PGA1_c25720 0.63 +1.0 2,679,973 + PGA1_c25720 0.71 -1.7 2,679,973 + PGA1_c25720 0.71 -1.4 2,679,973 + PGA1_c25720 0.71 -0.1 2,679,981 - PGA1_c25720 0.72 -0.9 2,679,981 - PGA1_c25720 0.72 -0.9 2,679,981 - PGA1_c25720 0.72 +0.3 2,679,981 - PGA1_c25720 0.72 -0.4 2,679,981 - PGA1_c25720 0.72 -1.0 2,680,121 + PGA1_c25720 0.88 +0.8 2,680,154 - -1.4 2,680,304 + +0.5 2,680,379 + PGA1_c25730 0.15 -1.0 2,680,386 + PGA1_c25730 0.17 -1.4 2,680,416 - PGA1_c25730 0.28 +0.9 2,680,437 + PGA1_c25730 0.35 -1.1 2,680,437 + PGA1_c25730 0.35 -0.8 2,680,437 - PGA1_c25730 0.35 -1.7 2,680,445 - PGA1_c25730 0.38 -2.4 2,680,445 - PGA1_c25730 0.38 -0.0 2,680,450 - PGA1_c25730 0.40 +1.0 2,680,462 + PGA1_c25730 0.44 -0.6 2,680,472 - PGA1_c25730 0.48 -0.4 2,680,520 + PGA1_c25730 0.65 -1.0 2,680,527 - PGA1_c25730 0.67 -0.2 2,680,538 - PGA1_c25730 0.71 -0.5 2,680,544 - PGA1_c25730 0.73 -1.4 2,680,573 - PGA1_c25730 0.83 +0.2 2,680,585 + PGA1_c25730 0.88 -0.0 2,680,675 - +0.2 2,680,702 + -0.8 2,680,855 + +0.3 2,680,861 + -1.4 2,680,888 + -2.4 2,680,888 + +0.6 2,680,916 - -2.7 2,680,959 + +1.1 2,680,959 + +0.6 2,680,967 - -1.4 2,680,975 + -1.8 2,681,004 + -2.8 2,681,113 - +0.0 2,681,113 - -0.6 2,681,113 - -0.0 2,681,394 + PGA1_c25740 0.18 +1.2 2,681,394 + PGA1_c25740 0.18 +0.2 2,681,405 + PGA1_c25740 0.19 +0.4 2,681,481 + PGA1_c25740 0.22 -0.1 2,681,546 - PGA1_c25740 0.24 -0.8 2,681,592 - PGA1_c25740 0.26 -0.8
Or see this region's nucleotide sequence