Strain Fitness in Marinobacter adhaerens HP15 around HP15_251

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_250 and HP15_251 are separated by 68 nucleotidesHP15_251 and HP15_252 overlap by 7 nucleotidesHP15_252 and HP15_253 are separated by 183 nucleotides HP15_250: HP15_250 - site-specific tyrosine recombinase XerC, at 238,530 to 239,462 _250 HP15_251: HP15_251 - diguanylate cyclase, at 239,531 to 241,024 _251 HP15_252: HP15_252 - conserved hypothetical protein, at 241,018 to 241,257 _252 HP15_253: HP15_253 - extracellular solute-binding protein, family 3, at 241,441 to 244,149 _253 Position (kb) 239 240 241 242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 238.929 kb on - strand, within HP15_250at 239.026 kb on - strand, within HP15_250at 239.031 kb on - strand, within HP15_250at 239.031 kb on - strand, within HP15_250at 239.102 kb on + strand, within HP15_250at 239.112 kb on - strand, within HP15_250at 239.193 kb on + strand, within HP15_250at 239.330 kb on - strand, within HP15_250at 239.330 kb on - strand, within HP15_250at 239.354 kb on + strand, within HP15_250at 239.362 kb on - strand, within HP15_250at 239.548 kb on - strandat 239.605 kb on - strandat 239.630 kb on - strandat 239.663 kb on + strandat 239.844 kb on + strand, within HP15_251at 239.865 kb on - strand, within HP15_251at 239.878 kb on + strand, within HP15_251at 239.883 kb on + strand, within HP15_251at 239.922 kb on - strand, within HP15_251at 240.021 kb on + strand, within HP15_251at 240.021 kb on + strand, within HP15_251at 240.021 kb on + strand, within HP15_251at 240.029 kb on - strand, within HP15_251at 240.029 kb on - strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.112 kb on + strand, within HP15_251at 240.112 kb on - strand, within HP15_251at 240.112 kb on - strand, within HP15_251at 240.125 kb on - strand, within HP15_251at 240.135 kb on - strand, within HP15_251at 240.206 kb on + strand, within HP15_251at 240.214 kb on + strand, within HP15_251at 240.233 kb on + strand, within HP15_251at 240.236 kb on - strand, within HP15_251at 240.236 kb on - strand, within HP15_251at 240.246 kb on - strand, within HP15_251at 240.263 kb on - strand, within HP15_251at 240.327 kb on + strand, within HP15_251at 240.329 kb on - strand, within HP15_251at 240.357 kb on - strand, within HP15_251at 240.436 kb on + strand, within HP15_251at 240.444 kb on - strand, within HP15_251at 240.444 kb on - strand, within HP15_251at 240.451 kb on + strand, within HP15_251at 240.472 kb on + strand, within HP15_251at 240.485 kb on - strand, within HP15_251at 240.489 kb on + strand, within HP15_251at 240.509 kb on + strand, within HP15_251at 240.544 kb on - strand, within HP15_251at 240.553 kb on - strand, within HP15_251at 240.559 kb on + strand, within HP15_251at 240.610 kb on - strand, within HP15_251at 240.629 kb on + strand, within HP15_251at 240.642 kb on - strand, within HP15_251at 240.672 kb on - strand, within HP15_251at 240.921 kb on + strandat 240.967 kb on + strandat 240.981 kb on + strandat 240.991 kb on + strandat 241.000 kb on - strandat 241.016 kb on - strandat 241.120 kb on - strand, within HP15_252at 241.120 kb on - strand, within HP15_252at 241.333 kb on + strandat 241.392 kb on + strandat 241.454 kb on - strandat 241.559 kb on + strandat 241.630 kb on - strandat 241.644 kb on + strandat 241.672 kb on + strandat 241.680 kb on - strandat 241.695 kb on - strandat 241.877 kb on - strand, within HP15_253

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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238,929 - HP15_250 0.43 -0.9
239,026 - HP15_250 0.53 -0.5
239,031 - HP15_250 0.54 -0.6
239,031 - HP15_250 0.54 -0.5
239,102 + HP15_250 0.61 -3.2
239,112 - HP15_250 0.62 -1.7
239,193 + HP15_250 0.71 +0.3
239,330 - HP15_250 0.86 -0.0
239,330 - HP15_250 0.86 +0.2
239,354 + HP15_250 0.88 -0.0
239,362 - HP15_250 0.89 -0.3
239,548 - -0.3
239,605 - -0.1
239,630 - +0.6
239,663 + -0.2
239,844 + HP15_251 0.21 -1.5
239,865 - HP15_251 0.22 +0.0
239,878 + HP15_251 0.23 +0.5
239,883 + HP15_251 0.24 +1.0
239,922 - HP15_251 0.26 +0.3
240,021 + HP15_251 0.33 -0.0
240,021 + HP15_251 0.33 -0.0
240,021 + HP15_251 0.33 +0.7
240,029 - HP15_251 0.33 -0.4
240,029 - HP15_251 0.33 -0.4
240,104 + HP15_251 0.38 +1.1
240,104 + HP15_251 0.38 -0.6
240,104 + HP15_251 0.38 +1.3
240,104 + HP15_251 0.38 -0.4
240,104 + HP15_251 0.38 -0.6
240,112 + HP15_251 0.39 -0.2
240,112 - HP15_251 0.39 -0.0
240,112 - HP15_251 0.39 -0.0
240,125 - HP15_251 0.40 -0.7
240,135 - HP15_251 0.40 +0.2
240,206 + HP15_251 0.45 +0.0
240,214 + HP15_251 0.46 +0.0
240,233 + HP15_251 0.47 -0.5
240,236 - HP15_251 0.47 +1.4
240,236 - HP15_251 0.47 -0.7
240,246 - HP15_251 0.48 -1.5
240,263 - HP15_251 0.49 -0.1
240,327 + HP15_251 0.53 +0.9
240,329 - HP15_251 0.53 -0.1
240,357 - HP15_251 0.55 +0.0
240,436 + HP15_251 0.61 +0.5
240,444 - HP15_251 0.61 +0.2
240,444 - HP15_251 0.61 +2.2
240,451 + HP15_251 0.62 -0.1
240,472 + HP15_251 0.63 -0.1
240,485 - HP15_251 0.64 -0.4
240,489 + HP15_251 0.64 +0.1
240,509 + HP15_251 0.65 +0.3
240,544 - HP15_251 0.68 +0.3
240,553 - HP15_251 0.68 +2.0
240,559 + HP15_251 0.69 -1.3
240,610 - HP15_251 0.72 +0.3
240,629 + HP15_251 0.73 +0.6
240,642 - HP15_251 0.74 -0.7
240,672 - HP15_251 0.76 -1.1
240,921 + +1.7
240,967 + +0.4
240,981 + -1.0
240,991 + -0.1
241,000 - +0.1
241,016 - -0.9
241,120 - HP15_252 0.42 +0.1
241,120 - HP15_252 0.42 -0.1
241,333 + -2.0
241,392 + +0.3
241,454 - -0.0
241,559 + -1.3
241,630 - -0.6
241,644 + -0.4
241,672 + +1.0
241,680 - -0.2
241,695 - -1.2
241,877 - HP15_253 0.16 -4.1

Or see this region's nucleotide sequence