Experiment: m.b. 2-Furfuraldehyde 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c25240 and PGA1_c25250 are separated by 156 nucleotides PGA1_c25250 and PGA1_c25260 are separated by 42 nucleotides PGA1_c25260 and PGA1_c25280 are separated by 203 nucleotides
PGA1_c25240: PGA1_c25240 - histidinol-phosphate aminotransferase [EC:2.6.1.9] (from data) , at 2,628,796 to 2,629,881
_c25240
PGA1_c25250: PGA1_c25250 - transcriptional regulator, AsnC family, at 2,630,038 to 2,630,499
_c25250
PGA1_c25260: PGA1_c25260 - PA14 domain., at 2,630,542 to 2,631,117
_c25260
PGA1_c25280: PGA1_c25280 - 30S ribosomal protein S4, at 2,631,321 to 2,631,941
_c25280
Position (kb)
2630
2631 Strain fitness (log2 ratio)
-1
0
1
2 at 2629.900 kb on - strand at 2629.965 kb on + strand at 2629.973 kb on + strand at 2629.986 kb on + strand at 2629.986 kb on + strand at 2629.986 kb on + strand at 2629.994 kb on - strand at 2629.994 kb on - strand at 2630.023 kb on + strand at 2630.023 kb on + strand at 2630.023 kb on + strand at 2630.031 kb on - strand at 2630.031 kb on - strand at 2630.042 kb on + strand at 2630.057 kb on + strand at 2630.065 kb on - strand at 2630.153 kb on + strand, within PGA1_c25250 at 2630.223 kb on + strand, within PGA1_c25250 at 2630.315 kb on + strand, within PGA1_c25250 at 2630.323 kb on - strand, within PGA1_c25250 at 2630.364 kb on + strand, within PGA1_c25250 at 2630.404 kb on + strand, within PGA1_c25250 at 2630.404 kb on + strand, within PGA1_c25250 at 2630.426 kb on - strand, within PGA1_c25250 at 2630.565 kb on + strand at 2630.610 kb on + strand, within PGA1_c25260 at 2630.610 kb on + strand, within PGA1_c25260 at 2630.610 kb on + strand, within PGA1_c25260 at 2630.610 kb on + strand, within PGA1_c25260 at 2630.610 kb on + strand, within PGA1_c25260 at 2630.618 kb on + strand, within PGA1_c25260 at 2630.618 kb on - strand, within PGA1_c25260 at 2630.618 kb on - strand, within PGA1_c25260 at 2630.618 kb on - strand, within PGA1_c25260 at 2630.636 kb on + strand, within PGA1_c25260 at 2630.681 kb on - strand, within PGA1_c25260 at 2630.862 kb on - strand, within PGA1_c25260 at 2630.863 kb on + strand, within PGA1_c25260 at 2630.868 kb on + strand, within PGA1_c25260 at 2630.897 kb on - strand, within PGA1_c25260 at 2630.898 kb on - strand, within PGA1_c25260 at 2631.016 kb on - strand, within PGA1_c25260 at 2631.091 kb on + strand at 2631.099 kb on - strand at 2631.149 kb on + strand at 2631.161 kb on + strand at 2631.161 kb on + strand at 2631.161 kb on + strand at 2631.161 kb on + strand at 2631.161 kb on + strand at 2631.161 kb on + strand at 2631.161 kb on + strand at 2631.161 kb on + strand at 2631.166 kb on + strand at 2631.169 kb on - strand at 2631.169 kb on - strand at 2631.169 kb on - strand at 2631.171 kb on + strand at 2631.250 kb on - strand at 2631.296 kb on - strand at 2631.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol% remove 2,629,900 - +0.0 2,629,965 + +0.6 2,629,973 + +0.6 2,629,986 + +1.0 2,629,986 + -0.8 2,629,986 + +0.5 2,629,994 - +0.5 2,629,994 - +2.6 2,630,023 + +0.0 2,630,023 + -0.1 2,630,023 + -0.1 2,630,031 - +0.1 2,630,031 - +1.5 2,630,042 + +0.2 2,630,057 + +1.6 2,630,065 - +0.2 2,630,153 + PGA1_c25250 0.25 +1.2 2,630,223 + PGA1_c25250 0.40 -0.1 2,630,315 + PGA1_c25250 0.60 +1.0 2,630,323 - PGA1_c25250 0.62 -0.4 2,630,364 + PGA1_c25250 0.71 -0.8 2,630,404 + PGA1_c25250 0.79 -1.6 2,630,404 + PGA1_c25250 0.79 -1.7 2,630,426 - PGA1_c25250 0.84 -1.5 2,630,565 + -0.3 2,630,610 + PGA1_c25260 0.12 -0.4 2,630,610 + PGA1_c25260 0.12 +0.2 2,630,610 + PGA1_c25260 0.12 -0.4 2,630,610 + PGA1_c25260 0.12 -0.6 2,630,610 + PGA1_c25260 0.12 -1.3 2,630,618 + PGA1_c25260 0.13 -0.5 2,630,618 - PGA1_c25260 0.13 +0.0 2,630,618 - PGA1_c25260 0.13 +1.6 2,630,618 - PGA1_c25260 0.13 -0.8 2,630,636 + PGA1_c25260 0.16 +0.2 2,630,681 - PGA1_c25260 0.24 -1.5 2,630,862 - PGA1_c25260 0.56 -1.7 2,630,863 + PGA1_c25260 0.56 -1.4 2,630,868 + PGA1_c25260 0.57 -1.2 2,630,897 - PGA1_c25260 0.62 +0.6 2,630,898 - PGA1_c25260 0.62 -0.6 2,631,016 - PGA1_c25260 0.82 -1.3 2,631,091 + -0.6 2,631,099 - -0.4 2,631,149 + +0.8 2,631,161 + +0.2 2,631,161 + +0.2 2,631,161 + -0.7 2,631,161 + +1.0 2,631,161 + -1.6 2,631,161 + +1.5 2,631,161 + +1.1 2,631,161 + -0.8 2,631,166 + +0.9 2,631,169 - +0.5 2,631,169 - +0.7 2,631,169 - +1.0 2,631,171 + -0.2 2,631,250 - -0.2 2,631,296 - +0.3 2,631,312 + +0.0
Or see this region's nucleotide sequence