Experiment: m.b. 2-Furfuraldehyde 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c12400 and PGA1_c12410 are separated by 48 nucleotides PGA1_c12410 and PGA1_c12420 are separated by 197 nucleotides PGA1_c12420 and PGA1_c12430 are separated by 51 nucleotides
PGA1_c12400: PGA1_c12400 - ccdA-like protein SoxV, at 1,288,860 to 1,289,597
_c12400
PGA1_c12410: PGA1_c12410 - thioredoxin SoxW, at 1,289,646 to 1,290,221
_c12410
PGA1_c12420: PGA1_c12420 - cytochrome c SoxX, at 1,290,419 to 1,290,895
_c12420
PGA1_c12430: PGA1_c12430 - sulfur oxidation protein SoxY, at 1,290,947 to 1,291,363
_c12430
Position (kb)
1289
1290
1291 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1288.701 kb on - strand at 1288.749 kb on + strand at 1288.815 kb on + strand at 1288.823 kb on - strand at 1288.851 kb on + strand at 1288.859 kb on - strand at 1288.859 kb on - strand at 1288.877 kb on + strand at 1288.909 kb on + strand at 1288.915 kb on + strand at 1288.949 kb on + strand, within PGA1_c12400 at 1288.965 kb on + strand, within PGA1_c12400 at 1289.004 kb on - strand, within PGA1_c12400 at 1289.070 kb on + strand, within PGA1_c12400 at 1289.078 kb on - strand, within PGA1_c12400 at 1289.190 kb on - strand, within PGA1_c12400 at 1289.201 kb on + strand, within PGA1_c12400 at 1289.204 kb on - strand, within PGA1_c12400 at 1289.238 kb on + strand, within PGA1_c12400 at 1289.246 kb on - strand, within PGA1_c12400 at 1289.264 kb on - strand, within PGA1_c12400 at 1289.271 kb on - strand, within PGA1_c12400 at 1289.354 kb on - strand, within PGA1_c12400 at 1289.378 kb on + strand, within PGA1_c12400 at 1289.386 kb on - strand, within PGA1_c12400 at 1289.466 kb on + strand, within PGA1_c12400 at 1289.476 kb on + strand, within PGA1_c12400 at 1289.591 kb on + strand at 1289.619 kb on + strand at 1289.627 kb on - strand at 1289.672 kb on - strand at 1289.697 kb on - strand at 1289.734 kb on - strand, within PGA1_c12410 at 1289.753 kb on + strand, within PGA1_c12410 at 1289.772 kb on + strand, within PGA1_c12410 at 1289.772 kb on + strand, within PGA1_c12410 at 1289.773 kb on + strand, within PGA1_c12410 at 1289.780 kb on - strand, within PGA1_c12410 at 1289.783 kb on + strand, within PGA1_c12410 at 1289.791 kb on - strand, within PGA1_c12410 at 1289.882 kb on - strand, within PGA1_c12410 at 1289.903 kb on + strand, within PGA1_c12410 at 1290.013 kb on - strand, within PGA1_c12410 at 1290.023 kb on - strand, within PGA1_c12410 at 1290.031 kb on + strand, within PGA1_c12410 at 1290.106 kb on + strand, within PGA1_c12410 at 1290.224 kb on - strand at 1290.256 kb on + strand at 1290.300 kb on - strand at 1290.359 kb on - strand at 1290.359 kb on - strand at 1290.365 kb on + strand at 1290.365 kb on + strand at 1290.373 kb on - strand at 1290.385 kb on + strand at 1290.385 kb on + strand at 1290.385 kb on + strand at 1290.432 kb on + strand at 1290.609 kb on + strand, within PGA1_c12420 at 1290.609 kb on + strand, within PGA1_c12420 at 1290.617 kb on - strand, within PGA1_c12420 at 1290.617 kb on - strand, within PGA1_c12420 at 1290.652 kb on + strand, within PGA1_c12420 at 1290.693 kb on + strand, within PGA1_c12420 at 1290.706 kb on - strand, within PGA1_c12420 at 1290.708 kb on + strand, within PGA1_c12420 at 1290.716 kb on - strand, within PGA1_c12420 at 1290.749 kb on - strand, within PGA1_c12420 at 1290.749 kb on - strand, within PGA1_c12420 at 1290.756 kb on + strand, within PGA1_c12420 at 1290.760 kb on + strand, within PGA1_c12420 at 1290.763 kb on - strand, within PGA1_c12420 at 1290.774 kb on + strand, within PGA1_c12420 at 1290.813 kb on + strand, within PGA1_c12420 at 1290.840 kb on - strand, within PGA1_c12420 at 1290.875 kb on - strand at 1290.880 kb on + strand at 1290.904 kb on + strand at 1290.929 kb on + strand at 1290.937 kb on - strand at 1290.944 kb on + strand at 1290.977 kb on - strand at 1290.983 kb on - strand at 1291.009 kb on + strand, within PGA1_c12430 at 1291.009 kb on + strand, within PGA1_c12430 at 1291.083 kb on + strand, within PGA1_c12430 at 1291.083 kb on + strand, within PGA1_c12430 at 1291.095 kb on - strand, within PGA1_c12430 at 1291.180 kb on + strand, within PGA1_c12430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 2-Furfuraldehyde 0.016 vol% remove 1,288,701 - +0.0 1,288,749 + -0.7 1,288,815 + +0.0 1,288,823 - -0.1 1,288,851 + +1.3 1,288,859 - -0.4 1,288,859 - +1.2 1,288,877 + -0.8 1,288,909 + +0.6 1,288,915 + +0.0 1,288,949 + PGA1_c12400 0.12 -0.4 1,288,965 + PGA1_c12400 0.14 +1.2 1,289,004 - PGA1_c12400 0.20 +2.2 1,289,070 + PGA1_c12400 0.28 -0.2 1,289,078 - PGA1_c12400 0.30 -0.5 1,289,190 - PGA1_c12400 0.45 -0.1 1,289,201 + PGA1_c12400 0.46 +0.0 1,289,204 - PGA1_c12400 0.47 +1.6 1,289,238 + PGA1_c12400 0.51 +0.1 1,289,246 - PGA1_c12400 0.52 +0.0 1,289,264 - PGA1_c12400 0.55 -0.4 1,289,271 - PGA1_c12400 0.56 -2.4 1,289,354 - PGA1_c12400 0.67 +1.1 1,289,378 + PGA1_c12400 0.70 -0.5 1,289,386 - PGA1_c12400 0.71 -0.8 1,289,466 + PGA1_c12400 0.82 -1.3 1,289,476 + PGA1_c12400 0.83 +0.3 1,289,591 + +0.6 1,289,619 + -0.4 1,289,627 - -1.7 1,289,672 - -0.6 1,289,697 - -1.9 1,289,734 - PGA1_c12410 0.15 -2.6 1,289,753 + PGA1_c12410 0.19 -1.3 1,289,772 + PGA1_c12410 0.22 -1.0 1,289,772 + PGA1_c12410 0.22 -1.0 1,289,773 + PGA1_c12410 0.22 -1.2 1,289,780 - PGA1_c12410 0.23 +1.6 1,289,783 + PGA1_c12410 0.24 +1.0 1,289,791 - PGA1_c12410 0.25 +0.6 1,289,882 - PGA1_c12410 0.41 -0.4 1,289,903 + PGA1_c12410 0.45 -0.1 1,290,013 - PGA1_c12410 0.64 -0.4 1,290,023 - PGA1_c12410 0.65 +0.9 1,290,031 + PGA1_c12410 0.67 +0.7 1,290,106 + PGA1_c12410 0.80 -0.9 1,290,224 - -0.1 1,290,256 + -2.0 1,290,300 - -2.2 1,290,359 - -1.0 1,290,359 - -0.7 1,290,365 + -0.2 1,290,365 + +0.4 1,290,373 - +0.8 1,290,385 + +0.8 1,290,385 + -1.4 1,290,385 + +1.6 1,290,432 + +0.7 1,290,609 + PGA1_c12420 0.40 +1.2 1,290,609 + PGA1_c12420 0.40 +0.2 1,290,617 - PGA1_c12420 0.42 -0.2 1,290,617 - PGA1_c12420 0.42 +1.0 1,290,652 + PGA1_c12420 0.49 -0.2 1,290,693 + PGA1_c12420 0.57 -0.1 1,290,706 - PGA1_c12420 0.60 +0.2 1,290,708 + PGA1_c12420 0.61 +0.5 1,290,716 - PGA1_c12420 0.62 +1.0 1,290,749 - PGA1_c12420 0.69 +0.3 1,290,749 - PGA1_c12420 0.69 +0.3 1,290,756 + PGA1_c12420 0.71 -0.8 1,290,760 + PGA1_c12420 0.71 -1.3 1,290,763 - PGA1_c12420 0.72 +0.9 1,290,774 + PGA1_c12420 0.74 +0.0 1,290,813 + PGA1_c12420 0.83 -0.5 1,290,840 - PGA1_c12420 0.88 +0.0 1,290,875 - -2.7 1,290,880 + +1.1 1,290,904 + +0.3 1,290,929 + -0.5 1,290,937 - +0.0 1,290,944 + +0.9 1,290,977 - +0.7 1,290,983 - -0.1 1,291,009 + PGA1_c12430 0.15 +0.3 1,291,009 + PGA1_c12430 0.15 +0.9 1,291,083 + PGA1_c12430 0.33 +0.6 1,291,083 + PGA1_c12430 0.33 +0.9 1,291,095 - PGA1_c12430 0.35 +0.0 1,291,180 + PGA1_c12430 0.56 -0.6
Or see this region's nucleotide sequence