Strain Fitness in Dechlorosoma suillum PS around Dsui_3384

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3383 and Dsui_3384 are separated by 21 nucleotidesDsui_3384 and Dsui_3385 are separated by 36 nucleotides Dsui_3383: Dsui_3383 - cAMP-binding protein, at 3,625,555 to 3,626,256 _3383 Dsui_3384: Dsui_3384 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 3,626,278 to 3,628,242 _3384 Dsui_3385: Dsui_3385 - Protein of unknown function (DUF1504), at 3,628,279 to 3,629,547 _3385 Position (kb) 3626 3627 3628 3629Strain fitness (log2 ratio) -2 -1 0 1 2at 3625.318 kb on - strandat 3625.336 kb on - strandat 3625.545 kb on + strandat 3625.558 kb on - strandat 3625.593 kb on + strandat 3625.593 kb on + strandat 3625.601 kb on - strandat 3625.611 kb on - strandat 3625.616 kb on - strandat 3625.655 kb on + strand, within Dsui_3383at 3625.821 kb on - strand, within Dsui_3383at 3625.888 kb on - strand, within Dsui_3383at 3625.918 kb on + strand, within Dsui_3383at 3625.926 kb on - strand, within Dsui_3383at 3625.990 kb on + strand, within Dsui_3383at 3626.021 kb on + strand, within Dsui_3383at 3626.028 kb on + strand, within Dsui_3383at 3626.109 kb on + strand, within Dsui_3383at 3626.232 kb on + strandat 3626.240 kb on - strandat 3626.325 kb on - strandat 3626.366 kb on + strandat 3626.535 kb on + strand, within Dsui_3384at 3626.556 kb on + strand, within Dsui_3384at 3626.561 kb on + strand, within Dsui_3384at 3626.561 kb on + strand, within Dsui_3384at 3626.569 kb on - strand, within Dsui_3384at 3626.580 kb on - strand, within Dsui_3384at 3626.690 kb on + strand, within Dsui_3384at 3626.706 kb on - strand, within Dsui_3384at 3626.729 kb on - strand, within Dsui_3384at 3626.841 kb on - strand, within Dsui_3384at 3626.875 kb on + strand, within Dsui_3384at 3626.878 kb on - strand, within Dsui_3384at 3626.883 kb on - strand, within Dsui_3384at 3626.939 kb on - strand, within Dsui_3384at 3626.980 kb on + strand, within Dsui_3384at 3627.171 kb on + strand, within Dsui_3384at 3627.212 kb on + strand, within Dsui_3384at 3627.323 kb on + strand, within Dsui_3384at 3627.391 kb on + strand, within Dsui_3384at 3627.422 kb on + strand, within Dsui_3384at 3627.519 kb on + strand, within Dsui_3384at 3627.653 kb on + strand, within Dsui_3384at 3627.672 kb on + strand, within Dsui_3384at 3627.910 kb on + strand, within Dsui_3384at 3627.910 kb on + strand, within Dsui_3384at 3627.920 kb on + strand, within Dsui_3384at 3627.959 kb on + strand, within Dsui_3384at 3628.012 kb on - strand, within Dsui_3384at 3628.012 kb on - strand, within Dsui_3384at 3628.012 kb on - strand, within Dsui_3384at 3628.012 kb on - strand, within Dsui_3384at 3628.159 kb on + strandat 3628.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,625,318 - +0.6
3,625,336 - +2.2
3,625,545 + -1.3
3,625,558 - -0.2
3,625,593 + -1.8
3,625,593 + -0.7
3,625,601 - -0.7
3,625,611 - +0.9
3,625,616 - +1.6
3,625,655 + Dsui_3383 0.14 -1.2
3,625,821 - Dsui_3383 0.38 -0.4
3,625,888 - Dsui_3383 0.47 +0.1
3,625,918 + Dsui_3383 0.52 -0.7
3,625,926 - Dsui_3383 0.53 +0.2
3,625,990 + Dsui_3383 0.62 -2.1
3,626,021 + Dsui_3383 0.66 -1.6
3,626,028 + Dsui_3383 0.67 -1.3
3,626,109 + Dsui_3383 0.79 -1.2
3,626,232 + -0.7
3,626,240 - -0.1
3,626,325 - +0.7
3,626,366 + -0.3
3,626,535 + Dsui_3384 0.13 +0.6
3,626,556 + Dsui_3384 0.14 +0.6
3,626,561 + Dsui_3384 0.14 -0.2
3,626,561 + Dsui_3384 0.14 +0.5
3,626,569 - Dsui_3384 0.15 +0.4
3,626,580 - Dsui_3384 0.15 +0.2
3,626,690 + Dsui_3384 0.21 +1.8
3,626,706 - Dsui_3384 0.22 -0.9
3,626,729 - Dsui_3384 0.23 +0.3
3,626,841 - Dsui_3384 0.29 +0.6
3,626,875 + Dsui_3384 0.30 +0.8
3,626,878 - Dsui_3384 0.31 +1.0
3,626,883 - Dsui_3384 0.31 -0.1
3,626,939 - Dsui_3384 0.34 +0.6
3,626,980 + Dsui_3384 0.36 +0.0
3,627,171 + Dsui_3384 0.45 +0.6
3,627,212 + Dsui_3384 0.48 +0.8
3,627,323 + Dsui_3384 0.53 +1.1
3,627,391 + Dsui_3384 0.57 +0.0
3,627,422 + Dsui_3384 0.58 +0.2
3,627,519 + Dsui_3384 0.63 +0.5
3,627,653 + Dsui_3384 0.70 +0.9
3,627,672 + Dsui_3384 0.71 +1.0
3,627,910 + Dsui_3384 0.83 -0.3
3,627,910 + Dsui_3384 0.83 +0.8
3,627,920 + Dsui_3384 0.84 +0.8
3,627,959 + Dsui_3384 0.86 +0.4
3,628,012 - Dsui_3384 0.88 +0.8
3,628,012 - Dsui_3384 0.88 +1.4
3,628,012 - Dsui_3384 0.88 +0.7
3,628,012 - Dsui_3384 0.88 +1.0
3,628,159 + +1.6
3,628,252 - +0.9

Or see this region's nucleotide sequence