Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3383 and Dsui_3384 are separated by 21 nucleotides Dsui_3384 and Dsui_3385 are separated by 36 nucleotides
Dsui_3383: Dsui_3383 - cAMP-binding protein, at 3,625,555 to 3,626,256
_3383
Dsui_3384: Dsui_3384 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 3,626,278 to 3,628,242
_3384
Dsui_3385: Dsui_3385 - Protein of unknown function (DUF1504), at 3,628,279 to 3,629,547
_3385
Position (kb)
3626
3627
3628
3629 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3625.318 kb on - strand at 3625.336 kb on - strand at 3625.545 kb on + strand at 3625.558 kb on - strand at 3625.593 kb on + strand at 3625.593 kb on + strand at 3625.601 kb on - strand at 3625.611 kb on - strand at 3625.616 kb on - strand at 3625.655 kb on + strand, within Dsui_3383 at 3625.821 kb on - strand, within Dsui_3383 at 3625.888 kb on - strand, within Dsui_3383 at 3625.918 kb on + strand, within Dsui_3383 at 3625.926 kb on - strand, within Dsui_3383 at 3625.990 kb on + strand, within Dsui_3383 at 3626.021 kb on + strand, within Dsui_3383 at 3626.028 kb on + strand, within Dsui_3383 at 3626.109 kb on + strand, within Dsui_3383 at 3626.232 kb on + strand at 3626.240 kb on - strand at 3626.325 kb on - strand at 3626.366 kb on + strand at 3626.535 kb on + strand, within Dsui_3384 at 3626.556 kb on + strand, within Dsui_3384 at 3626.561 kb on + strand, within Dsui_3384 at 3626.561 kb on + strand, within Dsui_3384 at 3626.569 kb on - strand, within Dsui_3384 at 3626.580 kb on - strand, within Dsui_3384 at 3626.690 kb on + strand, within Dsui_3384 at 3626.706 kb on - strand, within Dsui_3384 at 3626.729 kb on - strand, within Dsui_3384 at 3626.841 kb on - strand, within Dsui_3384 at 3626.875 kb on + strand, within Dsui_3384 at 3626.878 kb on - strand, within Dsui_3384 at 3626.883 kb on - strand, within Dsui_3384 at 3626.939 kb on - strand, within Dsui_3384 at 3626.980 kb on + strand, within Dsui_3384 at 3627.171 kb on + strand, within Dsui_3384 at 3627.212 kb on + strand, within Dsui_3384 at 3627.323 kb on + strand, within Dsui_3384 at 3627.391 kb on + strand, within Dsui_3384 at 3627.422 kb on + strand, within Dsui_3384 at 3627.519 kb on + strand, within Dsui_3384 at 3627.653 kb on + strand, within Dsui_3384 at 3627.672 kb on + strand, within Dsui_3384 at 3627.910 kb on + strand, within Dsui_3384 at 3627.910 kb on + strand, within Dsui_3384 at 3627.920 kb on + strand, within Dsui_3384 at 3627.959 kb on + strand, within Dsui_3384 at 3628.012 kb on - strand, within Dsui_3384 at 3628.012 kb on - strand, within Dsui_3384 at 3628.012 kb on - strand, within Dsui_3384 at 3628.012 kb on - strand, within Dsui_3384 at 3628.159 kb on + strand at 3628.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,625,318 - +0.6 3,625,336 - +2.2 3,625,545 + -1.3 3,625,558 - -0.2 3,625,593 + -1.8 3,625,593 + -0.7 3,625,601 - -0.7 3,625,611 - +0.9 3,625,616 - +1.6 3,625,655 + Dsui_3383 0.14 -1.2 3,625,821 - Dsui_3383 0.38 -0.4 3,625,888 - Dsui_3383 0.47 +0.1 3,625,918 + Dsui_3383 0.52 -0.7 3,625,926 - Dsui_3383 0.53 +0.2 3,625,990 + Dsui_3383 0.62 -2.1 3,626,021 + Dsui_3383 0.66 -1.6 3,626,028 + Dsui_3383 0.67 -1.3 3,626,109 + Dsui_3383 0.79 -1.2 3,626,232 + -0.7 3,626,240 - -0.1 3,626,325 - +0.7 3,626,366 + -0.3 3,626,535 + Dsui_3384 0.13 +0.6 3,626,556 + Dsui_3384 0.14 +0.6 3,626,561 + Dsui_3384 0.14 -0.2 3,626,561 + Dsui_3384 0.14 +0.5 3,626,569 - Dsui_3384 0.15 +0.4 3,626,580 - Dsui_3384 0.15 +0.2 3,626,690 + Dsui_3384 0.21 +1.8 3,626,706 - Dsui_3384 0.22 -0.9 3,626,729 - Dsui_3384 0.23 +0.3 3,626,841 - Dsui_3384 0.29 +0.6 3,626,875 + Dsui_3384 0.30 +0.8 3,626,878 - Dsui_3384 0.31 +1.0 3,626,883 - Dsui_3384 0.31 -0.1 3,626,939 - Dsui_3384 0.34 +0.6 3,626,980 + Dsui_3384 0.36 +0.0 3,627,171 + Dsui_3384 0.45 +0.6 3,627,212 + Dsui_3384 0.48 +0.8 3,627,323 + Dsui_3384 0.53 +1.1 3,627,391 + Dsui_3384 0.57 +0.0 3,627,422 + Dsui_3384 0.58 +0.2 3,627,519 + Dsui_3384 0.63 +0.5 3,627,653 + Dsui_3384 0.70 +0.9 3,627,672 + Dsui_3384 0.71 +1.0 3,627,910 + Dsui_3384 0.83 -0.3 3,627,910 + Dsui_3384 0.83 +0.8 3,627,920 + Dsui_3384 0.84 +0.8 3,627,959 + Dsui_3384 0.86 +0.4 3,628,012 - Dsui_3384 0.88 +0.8 3,628,012 - Dsui_3384 0.88 +1.4 3,628,012 - Dsui_3384 0.88 +0.7 3,628,012 - Dsui_3384 0.88 +1.0 3,628,159 + +1.6 3,628,252 - +0.9
Or see this region's nucleotide sequence